Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E04
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   6.5  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   6.5  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   6.5  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   6.5  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   6.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   8.6  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 497 NRTCEFLMFYIDFLHGNPYNLFRI 568
           NR C  +    D +H +  N+F+I
Sbjct: 42  NRACILIKDLFDNVHNHIQNIFKI 65


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 497 NRTCEFLMFYIDFLHGNPYNLFRI 568
           NR C  +    D +H +  N+F+I
Sbjct: 25  NRACILIKDLFDNVHNHIQNIFKI 48


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 151 NNRKLNNR*LPILGNCRQIIYYYNIISRVFYKKYMYFLN 267
           NN K N        NC+++ Y  N I ++     +Y+ N
Sbjct: 94  NNYKYNYNNNNYNNNCKKLYYNINYIEQIPIPVPVYYGN 132


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 151 NNRKLNNR*LPILGNCRQIIYYYNIISRVFYKKYMYFLN 267
           NN K N        NC+++ Y  N I ++     +Y+ N
Sbjct: 94  NNYKYNYNNNNYNNNCKKLYYNINYIEQIPIPVPVYYGN 132


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 151 NNRKLNNR*LPILGNCRQIIYYYNIISRVFYKKYMYFLN 267
           NN K N        NC+++ Y  N I ++     +Y+ N
Sbjct: 94  NNYKYNYNNNNYNNNCKKLYYNINYIEQIPIPVPVYYGN 132


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +1

Query: 190  GNCRQIIYYYNIISRVFYKKYMYFLNKYM*NSFY 291
            G C  ++     +++  YK+  Y +++   +SFY
Sbjct: 926  GGCSSLVDVSTPVNKKVYKQNDYIVDESSSSSFY 959


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 125 PSRPSYIYFETNTKKS 78
           P+RPSY  +E N   S
Sbjct: 6   PNRPSYCTWELNATNS 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,910
Number of Sequences: 438
Number of extensions: 3055
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)