Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_E01
         (406 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311...    27   4.3  
11_04_0047 + 12787845-12788004,12788297-12788940                       27   5.6  
01_06_1170 + 35087705-35088211                                         27   5.6  
06_01_1116 + 9197761-9199956                                           27   7.5  
10_08_0073 + 14657400-14657696,14658168-14658229,14658241-14658886     26   9.9  
02_01_0428 - 3127098-3129254                                           26   9.9  
01_05_0402 + 21810906-21811831,21811875-21812472,21813119-21813391     26   9.9  

>02_01_0425 -
           3102629-3104692,3106505-3108546,3109918-3109989,
           3110157-3111444
          Length = 1821

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 243 FSQSRGLGHCSDGWTSTYDCVSHSLANFLQFLEGIS 136
           + + R LG    G +ST  C+    +  LQFL G+S
Sbjct: 441 YREKRRLGSQVGGASSTDSCIDQEKSVLLQFLAGLS 476


>11_04_0047 + 12787845-12788004,12788297-12788940
          Length = 267

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 294 LYKHEKIHKKVNE*LFSFSQSRGLGHCSDGWTSTYDC 184
           L K+EK  K+++  L S   +  LG  S+  T+T DC
Sbjct: 211 LAKYEKEKKQMSNSLPSDGDNTNLGASSESMTATVDC 247


>01_06_1170 + 35087705-35088211
          Length = 168

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 77  KLFCWLSLASSLWGPFRRRREIPS 148
           +L CWL +  + WG  RRR E P+
Sbjct: 123 RLLCWLGIGGA-WGGGRRRGEEPA 145


>06_01_1116 + 9197761-9199956
          Length = 731

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 162 SWP-ENERRSHKCWSSRRYSGPGHGFG*RKIII 257
           SWP ENER   KC     +S   H +   +III
Sbjct: 621 SWPMENERNKEKCNQEFHFSIEEHFYSSHQIII 653


>10_08_0073 + 14657400-14657696,14658168-14658229,14658241-14658886
          Length = 334

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 135 RRRRNGPHSEDASDNQQN 82
           RRRR  PH ED  D  +N
Sbjct: 120 RRRRRDPHREDDGDRHRN 137


>02_01_0428 - 3127098-3129254
          Length = 718

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 201 TSTYDCVSHSLANFLQFLEGIS 136
           +ST  C  H  + FLQFL G+S
Sbjct: 16  SSTSSCKDHEKSFFLQFLAGLS 37


>01_05_0402 + 21810906-21811831,21811875-21812472,21813119-21813391
          Length = 598

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 108 RYGDRFGGAVKSLLGIGESWPENERRSHKCWS 203
           R+    GGA+ + L IG SWP     SH  W+
Sbjct: 135 RFSHLTGGAIVNSLTIGVSWPP----SHDLWN 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,344,988
Number of Sequences: 37544
Number of extensions: 168831
Number of successful extensions: 356
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)