Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_D24
(478 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po... 39 5e-04
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 29 0.37
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 27 1.1
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 27 1.5
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 27 1.9
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 27 1.9
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 2.6
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 25 4.5
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 5.9
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 7.9
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 25 7.9
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 25 7.9
>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 38.7 bits (86), Expect = 5e-04
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Frame = +1
Query: 4 YHHCTLLVNANKADLSKALAKRET----HATASTRSEVANLTDLDNRVTVESLQTALGYE 171
YHH T+L+N++ + + L T +STRS V+N L + + L ++
Sbjct: 166 YHHGTMLLNSDLEGVREYLRSPSTGILSKGVSSTRSPVSNTKLLKAEFIKQVISCFLLHK 225
Query: 172 YLRTPALHLDD---GGQNLISKQRGFQFVNPTDDWF--PGLADLKNELQSWDWCYGKTPI 336
T L + L + +D P + NELQSW+W +G+TP
Sbjct: 226 SHSTTTKPLSKPRASSKRLYDIEPKSVITLEQNDLLGVPSILKAVNELQSWEWTFGQTPS 285
Query: 337 F 339
F
Sbjct: 286 F 286
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 29.1 bits (62), Expect = 0.37
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = +1
Query: 34 NKADLSK---ALAKRETHATASTRSEVANLT--DLDNRVTVESLQTALGYEYLRTP 186
+K D +K LA +E A +S S +++ D TV L+ ++ YEY RTP
Sbjct: 525 SKTDFNKLPVTLADKEVFAPSSDASSDKSVSYASFDEPFTVAELKYSIKYEYTRTP 580
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1220
Score = 27.5 bits (58), Expect = 1.1
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +1
Query: 340 TVSRTFPV--PAEILAPSKVYSATQELVITMTVEQGLINDVTLNIPP 474
TVS T V PA S VYS TQE T+ G ++ I P
Sbjct: 673 TVSGTVEVIEPAAGTVTSTVYSGTQEYTTTLATASGTVSGTVEVIEP 719
Score = 26.2 bits (55), Expect = 2.6
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +1
Query: 340 TVSRTFPV--PAEILAPSKVYSATQELVITMTVEQGLINDVTLNIPP 474
TVS T V PA + VYS TQE T+ G ++ I P
Sbjct: 637 TVSGTVEVIEPAAGTVTTTVYSGTQEYTTTLATASGTVSGTVEVIEP 683
Score = 26.2 bits (55), Expect = 2.6
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +1
Query: 340 TVSRTFPV--PAEILAPSKVYSATQELVITMTVEQGLINDVTLNIPP 474
TVS T V PA + VYS TQE T+ G ++ I P
Sbjct: 709 TVSGTVEVIEPAAGTVTTTVYSGTQEYTTTLATASGTVSGTVEVIEP 755
Score = 24.6 bits (51), Expect = 7.9
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Frame = +1
Query: 328 TPIFTVSRTFPVPAEILAP------SKVYSATQELVITMTVEQGLINDVTLNIPP 474
T + + + T P E++ P + VYS TQE T+ G ++ I P
Sbjct: 593 TTLASATDTVPGTVEVVEPEAGTVTTTVYSGTQEYTTTLATASGTVSGTVEVIEP 647
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 27.1 bits (57), Expect = 1.5
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -2
Query: 249 NELESTLF*DQVLSSVI*MECRSAEVLVA*RSL*AFHSHSIIQVGQIRHLGPRRCRRVSL 70
N + TL DQV +I EC S EV + +L SH + +V ++ C +VSL
Sbjct: 382 NSFDFTLENDQVPPRLIASECTSLEVFIQHITLSRILSHFVRKVYPVKSPSDSHC-KVSL 440
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 26.6 bits (56), Expect = 1.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 287 KSARPGNQSSVGLTNWNPRCFEIRFCPPSSRWS 189
K +RP +QSS+ L+NW+ F P S+ S
Sbjct: 146 KKSRPSSQSSIFLSNWS-TIFSSNASPTDSQLS 177
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 26.6 bits (56), Expect = 1.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 274 GLADLKNELQSWDWCYGKTPIFTVS 348
G L NEL +W YG TP F++S
Sbjct: 94 GSKTLTNELSTWS--YGLTPFFSIS 116
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.2 bits (55), Expect = 2.6
Identities = 12/57 (21%), Positives = 27/57 (47%)
Frame = +1
Query: 190 LHLDDGGQNLISKQRGFQFVNPTDDWFPGLADLKNELQSWDWCYGKTPIFTVSRTFP 360
L +DD ++ F+ PT +W P + L + L + + + + +++T+P
Sbjct: 2976 LSVDDSHGSVSEVVSSFKSEIPTWNWIPFIPQLLSALSHRESIHARAILIQIAKTYP 3032
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 4.5
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +1
Query: 37 KADLSKALAKRETHATASTRSEVANLTDLDNRVTVESLQTALGYEYLRTPAL-HLDDGGQ 213
K + A A ++ A + + TDL N V E L+ G E++ + H+D G
Sbjct: 193 KTPSAPAAALKKAAEAAEPATVTEDATDLQNEVDQELLKDMYGKEHVNIVFIGHVDAGKS 252
Query: 214 NL 219
L
Sbjct: 253 TL 254
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.0 bits (52), Expect = 5.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 364 PAEILAPSKVYSATQELVITMT 429
P +I AP+ Y+ATQE ++ T
Sbjct: 395 PQKITAPTSPYAATQEELLAFT 416
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 24.6 bits (51), Expect = 7.9
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = +1
Query: 358 PVPAEILAPSKVYSATQELV-----ITMTVEQGLINDVTLNIP 471
P P +++A KV +EL+ T+ +E IND + +P
Sbjct: 371 PAPEDVIAKMKVQKPPKELIDEEGECTICMEMFKINDDVIQLP 413
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 24.6 bits (51), Expect = 7.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 79 ATASTRSEVANLTDLDNRVTVESLQTALGYEYLRTPAL 192
A +T ++ ANL + +T E+ T+ G E +P+L
Sbjct: 67 AAPNTHAQQANLQSGNTSITHETQSTSRGQEATTSPSL 104
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.6 bits (51), Expect = 7.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 135 HSIIQVGQIRHLGPRRCRRVSL 70
HS +++GQI HL + R++ L
Sbjct: 84 HSFLEIGQIPHLKLSKTRKIVL 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.132 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,913,094
Number of Sequences: 5004
Number of extensions: 38434
Number of successful extensions: 121
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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