Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D24
         (478 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0214 - 19111493-19112413,19112674-19112750,19113843-191144...    28   3.4  
02_05_0655 + 30668706-30668849,30669043-30669471                       28   4.5  

>05_04_0214 -
           19111493-19112413,19112674-19112750,19113843-19114412,
           19114605-19114754,19115499-19115643
          Length = 620

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 364 PAEILAPSKVYSATQELVITMTVEQGLINDVTLNIP 471
           P    A +   S TQE+ ++ TVE G  NDV L+ P
Sbjct: 510 PTSSSAINNQNSKTQEMSVSQTVELGCGNDVMLDWP 545


>02_05_0655 + 30668706-30668849,30669043-30669471
          Length = 190

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 78  RDGIDAVRGGESDRLG*SSDCGKPT-NCARLRVPPHSGTPSR*RR 209
           ++ I   + G   RLG  S C  P    A    PPH+ TPS  RR
Sbjct: 47  KEVIKTSQSGSLLRLGLVSPCSAPPLPTAAAYTPPHTNTPSSRRR 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.132    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,094,964
Number of Sequences: 37544
Number of extensions: 276101
Number of successful extensions: 718
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)