Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D23
         (425 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   0.92 
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    26   2.8  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   3.7  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   4.9  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   4.9  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   8.6  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 0.92
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 12  PKVSTTTGLELPASSGFPRPLPGRRSTLEPIHAGSSGA*QPLSLAILPRMS 164
           P +   TGL+ P  +GF +P+  +R+ ++P   G      P    + P+M+
Sbjct: 457 PMMPQRTGLQ-PQMTGFQQPMVPQRTGMQPQMTGFQQPMMPQRTGLQPQMT 506



 Score = 27.1 bits (57), Expect = 1.2
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 12  PKVSTTTGLELPASSGFPRPLPGRRSTLEPIHAGSSGA*QPLSLAILPRMS 164
           P +   TG++ P  +GF +P+  +R+ L+P   G      P    + P+M+
Sbjct: 439 PMIPQRTGMQ-PQMTGFQQPMMPQRTGLQPQMTGFQQPMVPQRTGMQPQMT 488



 Score = 26.2 bits (55), Expect = 2.1
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 12  PKVSTTTGLELPASSGFPRPLPGRRSTLEPIHAGSSGA*QPLSLAILPRM 161
           P V   TG++ P  +GF +P+  +R+ L+P   G      P    + P M
Sbjct: 475 PMVPQRTGMQ-PQMTGFQQPMMPQRTGLQPQMTGFQQPMVPQRTGMQPMM 523



 Score = 24.6 bits (51), Expect = 6.5
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +3

Query: 30  TGLELPASSGFPRPLPGRRSTLEPIHAGSSGA*QPLSLAILPRMS 164
           TG++ P  +GF +P+  +R+ ++P   G      P    + P+M+
Sbjct: 427 TGMQ-PQMTGFQQPMIPQRTGMQPQMTGFQQPMMPQRTGLQPQMT 470


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 354 HILYTHIYTYIQHA*CISCYKMLSVLL 274
           H+LY + + Y Q    + CY+ L +L+
Sbjct: 746 HLLYPNTHAYAQDVERLRCYEFLGMLI 772


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 1   DGLPQRSPQQPVLSYPHPAGSHDLCRVVGPPWSLSTLGHPVRS 129
           DGLP +SP++P +S      S D+      P S   L   ++S
Sbjct: 88  DGLPSKSPRRPSVSASTVRNSDDVNHSKAGPGSGKLLNDTLQS 130


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +1

Query: 121 VRSSHLV*QFFRECRLLCSCSITLVIDV*ELHSTFAIVTGNIGDNFKV 264
           +R S  V   F     +CSC++   +D    HS +++++ ++ + FK+
Sbjct: 768 LRKSSEVFYSFSILETVCSCNLDRFLDSKLDHSGWSLISKSLSEVFKI 815


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +3

Query: 21  STTTGLELPASSGFPRPLPGRRSTLEPIHAGSSGA*QPLSLAILP--RMSATL 173
           S    L +PA    P      R    P+H  SS    P+S+   P  R S+T+
Sbjct: 216 SVVADLLIPAGVNLPGAQEPNRGYFSPMHTYSSAVPGPISVPSAPYGRASSTI 268


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 329  VYMCVYRICRMCVNY*ILDLLPDCLSSNV 415
            VY+  YR+        ++D+LP+C+S ++
Sbjct: 1653 VYLFPYRVTATNPGCGVIDVLPNCISRDM 1681


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,895,515
Number of Sequences: 5004
Number of extensions: 39296
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)