Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_D23
(425 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 30 0.90
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532... 30 0.90
05_06_0057 + 25253497-25253589,25253722-25253799,25254583-252546... 30 0.90
09_04_0237 - 15936630-15937250,15937457-15937534,15938874-159389... 29 1.6
05_05_0223 - 23406814-23407477,23407597-23407919 29 2.1
05_04_0200 + 18986183-18986330,18986434-18986513,18987237-189874... 28 3.6
02_03_0251 + 16849905-16851308 28 3.6
11_03_0207 + 11675204-11676542,11676829-11676962,11677171-116774... 27 6.3
03_01_0527 + 3960982-3961290,3961371-3961464,3961898-3962084,396... 27 6.3
07_03_1371 - 26100553-26101767 27 8.3
06_02_0337 - 14638429-14639295,14640281-14640460,14640743-14641831 27 8.3
04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,900... 27 8.3
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 29.9 bits (64), Expect = 0.90
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 12 PKVSTTTGLELPASSGFPRPLP-GRRSTLEPIHAGSSGA*QPLSLAILPRM 161
PKV++TT L+ S+ FP P+P + + P ++ P + + LP M
Sbjct: 709 PKVNSTTSLQSTPSTSFPSPVPTTSNNNMMPAPQNTNQLSSPTASSNLPPM 759
>11_01_0657 +
5322295-5323367,5323436-5323555,5323743-5323791,
5323968-5324084,5324200-5324268,5324394-5324488,
5325183-5325521,5327043-5327084,5327814-5327907,
5328121-5328190,5328719-5329677
Length = 1008
Score = 29.9 bits (64), Expect = 0.90
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 12 PKVSTTTGLELPASSGFPRPLP-GRRSTLEPIHAGSSGA*QPLSLAILPRM 161
PKV++TT L+ S+ FP P+P + + P ++ P + + LP M
Sbjct: 797 PKVNSTTSLQSNPSTSFPSPMPTTSNNNMMPAPQSTNQLSSPTTSSNLPPM 847
>05_06_0057 +
25253497-25253589,25253722-25253799,25254583-25254621,
25254724-25255263,25255352-25255450,25255614-25255691,
25255961-25256146,25256240-25256365
Length = 412
Score = 29.9 bits (64), Expect = 0.90
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 54 SGFPRP-LPGRRSTLEPIHAGSSGA*QPLSLAILPRMSA 167
S FP+P LP + ++P SSG P S LP MSA
Sbjct: 98 SSFPQPQLPSSQQNIQPSGPFSSGPSNPASSLDLPAMSA 136
>09_04_0237 -
15936630-15937250,15937457-15937534,15938874-15938973,
15940414-15942278
Length = 887
Score = 29.1 bits (62), Expect = 1.6
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -1
Query: 182 EQEQSSRHSRKNC*TKWLLRTG*PSVDRLQGGPTTRQRSWEPAGCG*LKTGCCG 21
E+E+ S N KW LR +D + GP+TR+ P G L T CG
Sbjct: 390 EEEEEGEFSMPNFYKKWGLRPS--DLDPDEAGPSTRRPRVLPLADGDLPTFDCG 441
>05_05_0223 - 23406814-23407477,23407597-23407919
Length = 328
Score = 28.7 bits (61), Expect = 2.1
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -2
Query: 139 LSGCYAPDDPAWIGSKVDRRPGKGRG--NPLDAGSSRPVVVETFGGD 5
L+G DD A G+ R+PG+GRG A SS+ + V GG+
Sbjct: 69 LAGAEDDDDAAGNGNGRKRKPGRGRGLTAASAAASSKRMRVSNAGGN 115
>05_04_0200 +
18986183-18986330,18986434-18986513,18987237-18987431,
18989147-18989233,18990011-18990061,18990211-18990390,
18990863-18991096
Length = 324
Score = 27.9 bits (59), Expect = 3.6
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Frame = +3
Query: 12 PKVSTTTGLELPASSG------FPRPLPGRRSTLEPI 104
P + L LP+SS +PRPLP RR L P+
Sbjct: 6 PALPAFASLLLPSSSSPPRRIPWPRPLPSRRGALRPV 42
>02_03_0251 + 16849905-16851308
Length = 467
Score = 27.9 bits (59), Expect = 3.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 187 TLVIDV*ELHSTFAIVTGNIGDNFKVP 267
TL+ DV E+H FA T D FK P
Sbjct: 208 TLIRDVPEMHDEFAAPTNEAKDLFKAP 234
>11_03_0207 +
11675204-11676542,11676829-11676962,11677171-11677411,
11677508-11677719,11677837-11677883,11677988-11678090,
11678594-11678830
Length = 770
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 163 DILGRIAKLSG-CYAPDDPAWIGSKVDRRPGKGRGNPLDAGSSRPVVVETF 14
++ R+ K G C++ D +K ++P KGRG+ D G VV F
Sbjct: 349 NVNNRVVKFDGNCFSDDPEHQHETKYCQQPHKGRGSNKDVGLVVTVVGVVF 399
>03_01_0527 +
3960982-3961290,3961371-3961464,3961898-3962084,
3962194-3962449,3962561-3962773,3962856-3962942,
3963089-3963223,3963296-3963409,3963507-3963754,
3963824-3963904,3963979-3964210,3964340-3964438,
3964513-3964701,3964928-3965023
Length = 779
Score = 27.1 bits (57), Expect = 6.3
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +3
Query: 294 YNTICITRVGCKCICVCIGYVEC 362
+ C TRV C CI C G+ C
Sbjct: 254 WGRFCETRVECSCINQCSGHGHC 276
>07_03_1371 - 26100553-26101767
Length = 404
Score = 26.6 bits (56), Expect = 8.3
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -2
Query: 172 KVADILGRIAKLSGCYAPDDPAWIGSKVDRRPGKGRGN--PLDAGSSRPVV 26
KVA G+ +L+GC A D I + V R+PG R + ++AG R +V
Sbjct: 129 KVAGFTGK-EELAGCLAGVDVVVIPAGVPRKPGMTRDDLFGINAGIVRELV 178
>06_02_0337 - 14638429-14639295,14640281-14640460,14640743-14641831
Length = 711
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -3
Query: 105 G*APRWTDDPAKVVG-TRWMRVAQDRLLWRPL 13
G APRWT P +G + W +DR PL
Sbjct: 660 GDAPRWTQAPRHSIGVSPWASAGEDRWHAAPL 691
>04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,
9004647-9004786,9004871-9005282,9006399-9006638
Length = 1222
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -3
Query: 105 G*APRWTDDPAKVVG-TRWMRVAQDR 31
G APRWT P +G + W ++DR
Sbjct: 1189 GDAPRWTQAPRHSIGVSTWASASEDR 1214
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,422,888
Number of Sequences: 37544
Number of extensions: 267484
Number of successful extensions: 798
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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