Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D23
         (425 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28440| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_55399| Best HMM Match : C1_4 (HMM E-Value=4.8)                      29   2.1  
SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 28   2.8  
SB_40438| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_21584| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   4.9  
SB_3178| Best HMM Match : BofA (HMM E-Value=0.43)                      27   4.9  
SB_52119| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)                    27   8.6  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               27   8.6  
SB_11432| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_28440| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 273 EVIQITFYNTI-CITRVGCKCICVCIGYVECV*IIRY 380
           E++ +T      C+T V C  +  C+  + CV +I Y
Sbjct: 36  EIVAVTLTTIFTCVTIVTCATVVTCVTVITCVTVIAY 72


>SB_55399| Best HMM Match : C1_4 (HMM E-Value=4.8)
          Length = 335

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 401 DSQVIDLISNNLHTFDISYTHTYTLTSNTRNAYRVIKCYLYYFSIGT 261
           ++  + L+S   +  DI  T T  L S   N  RV++ Y Y F I T
Sbjct: 68  EANTVALLSTMYNMNDIDLTGTEVLKSIPGNPLRVVQFYKYLFPICT 114


>SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1565

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 121  PDDPAWIGSKVDRRPGKGRGNPLDA 47
            PDD  ++ +  DR  GKG+G  L++
Sbjct: 1539 PDDHEYVNANADRGKGKGKGKRLES 1563


>SB_40438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 211 LHSTFAIVTGNIGDNFKVPIEK*YR*HFITRYALRVLDVSVYV 339
           L  +  IVTGNI +NFKV + K Y    I +  + + + S+ +
Sbjct: 139 LTDSIQIVTGNIENNFKVLLAKDYASCLIMKEGIIIEETSLEI 181


>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 365 HTFDISYTHTYTLTSNTRNAYRVIKCYLYYF 273
           +T+  +YT+TYT T      Y  +  Y+Y +
Sbjct: 32  YTYTYTYTYTYTYTYTYTYTYTYVYVYVYVY 62



 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 368 LHTFDISYTHTYTLTSNTRNAYRVIKCYLYYF 273
           ++T+  +YT+TYT T      Y     Y+Y +
Sbjct: 27  IYTYTYTYTYTYTYTYTYTYTYTYTYTYVYVY 58



 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 365 HTFDISYTHTYTLTSNTRNAYRVIKCYLYYF 273
           +T+  +YT+TYT T      Y  +  Y+Y +
Sbjct: 34  YTYTYTYTYTYTYTYTYTYTYVYVYVYVYVY 64



 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 365 HTFDISYTHTYTLTSNTRNAYRVIKCYLYYF 273
           +T+  +YT+TYT T      Y  +  Y+Y +
Sbjct: 36  YTYTYTYTYTYTYTYTYTYVYVYVYVYVYVY 66


>SB_21584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1750

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 99  APRWTDDPAKVVGTRWMRVAQDRLLWRP 16
           +P  TD+     G  W R+A D LLW P
Sbjct: 740 SPLATDNENSNGGFDWPRIASDLLLWEP 767


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 27   TTGLELPASSGFPRPLPGRRSTLEPIH 107
            T GLE+P +    RP  GR + L P H
Sbjct: 3182 TNGLEIPRTKTHGRPRCGREAGLTPCH 3208


>SB_3178| Best HMM Match : BofA (HMM E-Value=0.43)
          Length = 264

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -1

Query: 353 ISYTHTYTLTSNTRNAYRVIKCYLYYFSI---GTLKLSPMFPVTIANVL 216
           +++ ++ T TSN R AY V    L Y+S    GT+ +  +  + + N+L
Sbjct: 73  VTFGYSLTFTSNIRGAYLVEGDPLCYWSAIVNGTVGIGSIVTMVVVNIL 121


>SB_52119| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = -1

Query: 392 VIDLISNNLHTFDISYTHTYTLTSNTRNAYRVIKCYLYYFSIGTLKLSPMFPVTIANVL- 216
           V+D  S  L  FD+S     T   ++R  +  +   L  + + TL+  P   V+I  ++ 
Sbjct: 183 VLDAHSGTLSDFDVSGNLVVTSGFSSRQGHLAVDRILMMYDLRTLRSLPPMQVSIEPIML 242

Query: 215 --*SSYTSITKVIEQ 177
               ++TS   VI Q
Sbjct: 243 RFIPTFTSRMAVISQ 257


>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
          Length = 2726

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 6    SPPKVSTTTGLELPASSGFPRPLPGRRSTLEP 101
            SPP  S +T L  P+S+   +P P  +   EP
Sbjct: 971  SPPSSSQSTFLSSPSSTSLQQPSPSSQPHSEP 1002


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +1

Query: 4    GLPQRSPQQPVLSYPHPAGSHDLCRVVGPPWSLS--TLGHPVRSSHL 138
            G P  + QQP++ +PH    H +  +  PP S+    L HP    H+
Sbjct: 1165 GPPHHTMQQPLIHHPHE--PHQVQAMGPPPHSMQQPLLHHPQDPHHI 1209


>SB_11432| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 306 ISCYKMLSVLLLNWHFEIISYVSCNYCECAVKFLYI 199
           I CY    +  L  +F+++S+ +  Y E   KF+++
Sbjct: 312 IVCYFPYQLFFLLEYFQVLSFTNWKYFEVTRKFIFL 347


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,626,222
Number of Sequences: 59808
Number of extensions: 318529
Number of successful extensions: 949
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)