Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_D23
(425 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical ... 31 0.46
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 27 4.3
AF016451-6|AAB66000.2| 379|Caenorhabditis elegans Serpentine re... 27 5.6
U20864-7|AAK68357.1| 859|Caenorhabditis elegans Hypothetical pr... 27 7.4
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr... 27 7.4
AF038608-6|AAT92088.1| 312|Caenorhabditis elegans Serpentine re... 27 7.4
AC006762-2|AAF60558.2| 607|Caenorhabditis elegans Hypothetical ... 27 7.4
Z69716-1|CAA93526.1| 486|Caenorhabditis elegans Hypothetical pr... 26 9.8
U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protei... 26 9.8
M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein. 26 9.8
>AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical
protein T07A9.14 protein.
Length = 204
Score = 30.7 bits (66), Expect = 0.46
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +3
Query: 3 WSPPKVSTTTGLELPASSGFPRPLPGRRS 89
+SPP ST T P+SS P P P RRS
Sbjct: 168 YSPPPSSTPTPTPPPSSSSSPTPTPLRRS 196
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 89 GPTTRQRSWEPAGCG*LKTGCCG 21
G TT+Q PA C +T CCG
Sbjct: 849 GSTTKQSECAPAPCPFPRTSCCG 871
>AF016451-6|AAB66000.2| 379|Caenorhabditis elegans Serpentine
receptor, class w protein140 protein.
Length = 379
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -3
Query: 300 CYKMLSVLL---LNWHFEIISYVSCNYCECAVKFLY 202
C + SV+L + HF I +S Y ECA+KF++
Sbjct: 314 CEFLFSVILYANFSSHFIICLLMSSQYRECAMKFIF 349
>U20864-7|AAK68357.1| 859|Caenorhabditis elegans Hypothetical
protein F32A5.2b protein.
Length = 859
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 9 PPKVSTTTGLELPASSGFPRPLPGRRSTLEPIHAGSS 119
PP +TTT + PA++ F R +T I+ GS+
Sbjct: 219 PPTTTTTTTTQAPATTHFTREFTPPPTTRSFINTGSN 255
>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
protein F32A5.2a protein.
Length = 1000
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 9 PPKVSTTTGLELPASSGFPRPLPGRRSTLEPIHAGSS 119
PP +TTT + PA++ F R +T I+ GS+
Sbjct: 360 PPTTTTTTTTQAPATTHFTREFTPPPTTRSFINTGSN 396
>AF038608-6|AAT92088.1| 312|Caenorhabditis elegans Serpentine
receptor, class z protein82 protein.
Length = 312
Score = 26.6 bits (56), Expect = 7.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 347 YTHTYTLTSNTRNAYRVIKCYLYYFSIGTLKLSPMFPVTIANVL 216
Y + TLTS ++ +I C L Y S G M + +AN++
Sbjct: 226 YIYWQTLTSLILESFTIIMCILIYLS-GLSFSEIMLAIVLANII 268
>AC006762-2|AAF60558.2| 607|Caenorhabditis elegans Hypothetical
protein Y42G9A.4a protein.
Length = 607
Score = 26.6 bits (56), Expect = 7.4
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = +3
Query: 9 PPKVSTTTGLELPASSGFPRPLPGRRSTLEPIHAGSSGA*QPLSLAILP 155
P K L LP P P PG +ST P+ S+ +LP
Sbjct: 197 PEKSEAEIALSLPVPPLTPLPSPGAQSTAPPVFPTSTPTPTSTPTPLLP 245
>Z69716-1|CAA93526.1| 486|Caenorhabditis elegans Hypothetical
protein C04B4.1 protein.
Length = 486
Score = 26.2 bits (55), Expect = 9.8
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = -1
Query: 380 ISNNLHTFDISYTHTYTLTS-NTRNAYRVIKCYLYYF-SIGTLKLSPMFPVTIANVL*SS 207
I H F + H LT+ N + Y + + ++ T SP+FP + N S
Sbjct: 218 IERRTHLFRVDGEHPIVLTTVNMLSGYLLRSGGVTSVQNVLTFYQSPIFPAYLRNYFGSD 277
Query: 206 YTSITKVIE 180
+ S+ +++E
Sbjct: 278 FNSLVRILE 286
>U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protein
19 protein.
Length = 289
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -1
Query: 113 PSVDRLQGGPTTRQRSWEPAGCG*LKTGC 27
P+ + L G T RQ +E CG GC
Sbjct: 70 PTFETLFGARTARQAGFEQCNCGPKSEGC 98
>M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein.
Length = 283
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -1
Query: 113 PSVDRLQGGPTTRQRSWEPAGCG*LKTGC 27
P+ + L G T RQ +E CG GC
Sbjct: 64 PTFETLFGARTARQAGFEQCNCGPKSDGC 92
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,626,820
Number of Sequences: 27780
Number of extensions: 234164
Number of successful extensions: 634
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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