Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D23
         (425 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25500.1 68416.m03171 formin homology 2 domain-containing pro...    29   1.00 
At4g10060.1 68417.m01645 expressed protein contains Pfam domain ...    29   1.7  
At3g03690.1 68416.m00372 glycosyltransferase family 14 protein /...    28   2.3  
At5g48740.1 68418.m06032 leucine-rich repeat family protein / pr...    27   4.0  
At1g30750.1 68414.m03758 expressed protein                             27   4.0  
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ...    27   5.3  
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ...    27   5.3  
At2g04030.2 68415.m00372 heat shock protein, putative strong sim...    27   5.3  
At2g04030.1 68415.m00371 heat shock protein, putative strong sim...    27   5.3  
At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein ...    26   9.3  

>At3g25500.1 68416.m03171 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 1051

 Score = 29.5 bits (63), Expect = 1.00
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 10  PQRS-PQQPVLSYPHPAGSHDLCRVVGPPWSLSTLGHPVRSS 132
           P+RS P+ PV+S P PA   D   V  P  SL++L   +++S
Sbjct: 308 PKRSEPKPPVISTPEPAELTDYRFVRSPSLSLASLSSGLKNS 349


>At4g10060.1 68417.m01645 expressed protein contains Pfam domain
           PF04685: Protein of unknown function, DUF608
          Length = 912

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 143 SNSSENVGYFVLVRLL*LLMYKNFTAH 223
           SNS EN+G F+ +  +  LMY  +  H
Sbjct: 476 SNSEENIGQFIYLEGIEYLMYNTYDVH 502


>At3g03690.1 68416.m00372 glycosyltransferase family 14 protein /
           core-2/I-branching enzyme family protein contains Pfam
           profile: PF02485 Core-2/I-Branching enzyme
          Length = 378

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +2

Query: 161 VGYFVLVRLL*LLMYKNFTAHSQ*LQET*EIISKCQLRSNTDNIL*HDMHYACW 322
           +GY  L R L LL Y NF +  +   +T  I +  + ++ T N   HD+HY  W
Sbjct: 245 IGYDNLPRTL-LLYYTNFVSSPEGYFQT-LICNSDEFKNTTVN---HDLHYIAW 293


>At5g48740.1 68418.m06032 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 895

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -1

Query: 338 TYTLTSNTRNAYRVIKCYLYYFSIGTLKLSPMFPVTIAN-VL*SSYT 201
           +YTL+ +T   Y +I     YF+ G L LSP F VTI + V  S YT
Sbjct: 257 SYTLSLHTPGDYYII----LYFA-GILSLSPSFSVTINDEVKQSDYT 298


>At1g30750.1 68414.m03758 expressed protein
          Length = 212

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 33  GLELPASSGFPRPLPGRRSTLEPIHAGSSGA*QPLS 140
           G   P+S+G  +P+ G+ ST   ++   +G  QPL+
Sbjct: 74  GFNQPSSTGLKQPILGQPSTSSSVNQPLTGINQPLT 109


>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
            putative similar to SP|P22082 Transcription regulatory
            protein SNF2 (SWI/SNF complex component SNF2)
            {Saccharomyces cerevisiae}; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain
          Length = 2193

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
 Frame = +3

Query: 6    SPPKVSTTTGLELPASSGFPRP---LPGRRSTLEPIHAGSSGA 125
            SPP      GL  P S G PR       +R   +P H  +SGA
Sbjct: 2125 SPPPAMIGRGLRSPVSGGVPRETRLAQQQRWPNQPTHPNNSGA 2167


>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
            putative similar to SP|P22082 Transcription regulatory
            protein SNF2 (SWI/SNF complex component SNF2)
            {Saccharomyces cerevisiae}; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain
          Length = 2192

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
 Frame = +3

Query: 6    SPPKVSTTTGLELPASSGFPRP---LPGRRSTLEPIHAGSSGA 125
            SPP      GL  P S G PR       +R   +P H  +SGA
Sbjct: 2124 SPPPAMIGRGLRSPVSGGVPRETRLAQQQRWPNQPTHPNNSGA 2166


>At2g04030.2 68415.m00372 heat shock protein, putative strong
           similarity to heat shock protein [Arabidopsis thaliana]
           GI:1906830; contains Pfam profiles PF02518: ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein, PF00183: Hsp90 protein
          Length = 777

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 172 KVADILGRIAKLSGCYAPDDPAWIGSKV 89
           +V D+L   A +S  + PD PA +G+K+
Sbjct: 699 RVVDLLYDTAIISSGFTPDSPAELGNKI 726


>At2g04030.1 68415.m00371 heat shock protein, putative strong
           similarity to heat shock protein [Arabidopsis thaliana]
           GI:1906830; contains Pfam profiles PF02518: ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein, PF00183: Hsp90 protein
          Length = 780

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 172 KVADILGRIAKLSGCYAPDDPAWIGSKV 89
           +V D+L   A +S  + PD PA +G+K+
Sbjct: 702 RVVDLLYDTAIISSGFTPDSPAELGNKI 729


>At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein
           similar to SP|Q01205 Dihydrolipoamide
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex, mitochondrial precursor (EC
           2.3.1.61) {Rattus norvegicus}; contains Pfam profiles
           PF00198: 2-oxo acid dehydrogenases acyltransferase
           (catalytic domain), PF00364: Biotin-requiring enzyme
          Length = 464

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 12  PKVSTTTGLELPASSGFPRPLPGRRSTLEP 101
           PKV +T   E P +   P P P ++S  EP
Sbjct: 198 PKVESTKVAEKPKAPSPPPPPPSKQSAKEP 227


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,895,777
Number of Sequences: 28952
Number of extensions: 208259
Number of successful extensions: 551
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)