Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_D21
(284 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 28 0.30
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p... 24 3.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 24 4.9
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 24 4.9
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 23 6.5
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 23 6.5
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 23 6.5
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 23 6.5
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 23 6.5
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 23 6.5
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 23 6.5
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 23 6.5
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 23 6.5
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 23 6.5
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 23 6.5
SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine kinase|Schizosacc... 23 8.5
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe... 23 8.5
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 27.9 bits (59), Expect = 0.30
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 260 KLKVYYYLCTKTYNSIYILKLIFYKSQL 177
KL YYL T+++ + L+L+FYK +
Sbjct: 1203 KLYERYYLITRSFIGVAALQLLFYKKNI 1230
>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 254
Score = 24.2 bits (50), Expect = 3.7
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 108 NGVSNFFQPALKSSD 64
+G+S FQP LK+SD
Sbjct: 91 SGISKSFQPVLKTSD 105
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 23.8 bits (49), Expect = 4.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 254 KVYYYLCTKTYNSIYILK 201
KV YY TKTY +++L+
Sbjct: 59 KVKYYGETKTYGEVFVLE 76
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 23.8 bits (49), Expect = 4.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 239 LCTKTYNSIYILKLIFYKS 183
LC ++ SIY KL++ KS
Sbjct: 306 LCLSSFKSIYDTKLLYLKS 324
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 6.5
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 212 YILKLIFYKSQLKYC*FKSTLKKK-NWCWVPTRT 114
Y+ K I SQL + + LKK W W PT+T
Sbjct: 651 YLRKFIPKTSQLTHP-LNNLLKKDVRWKWTPTQT 683
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 6.5
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 212 YILKLIFYKSQLKYC*FKSTLKKK-NWCWVPTRT 114
Y+ K I SQL + + LKK W W PT+T
Sbjct: 651 YLRKFIPKTSQLTHP-LNNLLKKDVRWKWTPTQT 683
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 6.5
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 212 YILKLIFYKSQLKYC*FKSTLKKK-NWCWVPTRT 114
Y+ K I SQL + + LKK W W PT+T
Sbjct: 651 YLRKFIPKTSQLTHP-LNNLLKKDVRWKWTPTQT 683
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 6.5
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 212 YILKLIFYKSQLKYC*FKSTLKKK-NWCWVPTRT 114
Y+ K I SQL + + LKK W W PT+T
Sbjct: 651 YLRKFIPKTSQLTHP-LNNLLKKDVRWKWTPTQT 683
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 6.5
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 212 YILKLIFYKSQLKYC*FKSTLKKK-NWCWVPTRT 114
Y+ K I SQL + + LKK W W PT+T
Sbjct: 651 YLRKFIPKTSQLTHP-LNNLLKKDVRWKWTPTQT 683
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 6.5
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 212 YILKLIFYKSQLKYC*FKSTLKKK-NWCWVPTRT 114
Y+ K I SQL + + LKK W W PT+T
Sbjct: 651 YLRKFIPKTSQLTHP-LNNLLKKDVRWKWTPTQT 683
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 6.5
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 212 YILKLIFYKSQLKYC*FKSTLKKK-NWCWVPTRT 114
Y+ K I SQL + + LKK W W PT+T
Sbjct: 651 YLRKFIPKTSQLTHP-LNNLLKKDVRWKWTPTQT 683
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 6.5
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 212 YILKLIFYKSQLKYC*FKSTLKKK-NWCWVPTRT 114
Y+ K I SQL + + LKK W W PT+T
Sbjct: 651 YLRKFIPKTSQLTHP-LNNLLKKDVRWKWTPTQT 683
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 6.5
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 212 YILKLIFYKSQLKYC*FKSTLKKK-NWCWVPTRT 114
Y+ K I SQL + + LKK W W PT+T
Sbjct: 651 YLRKFIPKTSQLTHP-LNNLLKKDVRWKWTPTQT 683
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 6.5
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 212 YILKLIFYKSQLKYC*FKSTLKKK-NWCWVPTRT 114
Y+ K I SQL + + LKK W W PT+T
Sbjct: 651 YLRKFIPKTSQLTHP-LNNLLKKDVRWKWTPTQT 683
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.4 bits (48), Expect = 6.5
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 212 YILKLIFYKSQLKYC*FKSTLKKK-NWCWVPTRT 114
Y+ K I SQL + + LKK W W PT+T
Sbjct: 651 YLRKFIPKTSQLTHP-LNNLLKKDVRWKWTPTQT 683
>SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine
kinase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 340
Score = 23.0 bits (47), Expect = 8.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2
Query: 133 AGFPRGLNEWCIELLPT 83
A FP L+EW ++++PT
Sbjct: 31 ATFPLQLHEWEVDVVPT 47
>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 537
Score = 23.0 bits (47), Expect = 8.5
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 14 NDYSLGGKLNLFKTPTTSLDFNAGW 88
ND +L K+P T NAGW
Sbjct: 288 NDPNLSSGSKTLKSPMTIAIMNAGW 312
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,016,669
Number of Sequences: 5004
Number of extensions: 16323
Number of successful extensions: 51
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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