Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D21
         (284 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0844 + 11695159-11695263,11695402-11695463,11695789-116958...    25   7.1  
03_02_0200 - 6360682-6362517,6362599-6362670                           25   7.1  
10_08_0858 - 21108283-21108387,21108820-21108889,21109490-211096...    25   9.4  
10_08_0100 + 14788426-14789097                                         25   9.4  

>03_02_0844 +
           11695159-11695263,11695402-11695463,11695789-11695876,
           11695958-11696019,11696250-11696346,11696592-11696984,
           11697072-11697611,11697856-11697966,11698102-11698242,
           11698290-11698394,11698480-11698557,11699346-11699472,
           11699580-11699625,11699709-11699754
          Length = 666

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 53  TPTTSLDFNAGWKKFDTP 106
           T   S+D NAGW  FDTP
Sbjct: 363 TAAPSMD-NAGWATFDTP 379


>03_02_0200 - 6360682-6362517,6362599-6362670
          Length = 635

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 257 LKVYYYLCTKTYNSIYILKLI 195
           L+   Y C+ +YN+I++ KLI
Sbjct: 367 LEAENYACSSSYNAIFVKKLI 387


>10_08_0858 -
           21108283-21108387,21108820-21108889,21109490-21109646,
           21109930-21110062,21110409-21110583,21113353-21113453,
           21113620-21113706,21115871-21115931,21116114-21116178,
           21116534-21117631
          Length = 683

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 263 IKLKVYYYLCTKTYNSIYILKLIFYKSQLKYC 168
           +K+K   Y+C      ++ LK++F  +Q K C
Sbjct: 645 LKIKEVNYICYIYAEELHPLKVMFRNTQAKIC 676


>10_08_0100 + 14788426-14789097
          Length = 223

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 148 KRKTGAGFPRGLNEWCIELLPTG 80
           K  T   F  G +EWC++  P G
Sbjct: 47  KCATSPPFTAGGHEWCVDFYPNG 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,088,663
Number of Sequences: 37544
Number of extensions: 94296
Number of successful extensions: 198
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)