Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D21
         (284 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81593-6|CAB04740.2|  367|Caenorhabditis elegans Hypothetical pr...    26   5.0  
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p...    26   5.0  
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr...    26   5.0  
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue...    26   5.0  
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr...    25   6.6  
Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical pr...    25   6.6  
Z78012-8|CAB01418.2|  945|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z75953-6|CAB00103.2|  945|Caenorhabditis elegans Hypothetical pr...    25   8.7  
AY275181-1|AAP32289.1|  945|Caenorhabditis elegans soluble guany...    25   8.7  
AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of...    25   8.7  

>Z81593-6|CAB04740.2|  367|Caenorhabditis elegans Hypothetical
           protein T20B3.12 protein.
          Length = 367

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 130 GFPRGLNEWCIELLPTGVE 74
           G+P G+NE CI  + TG +
Sbjct: 202 GYPSGVNEECIYYMTTGTQ 220


>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
           protein T04H1.4b protein.
          Length = 1312

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 13  QRLLSGRKTESFQDAHHVAGLQRRLEEVRYTIH 111
           +R +S RK E+ +     A  Q+++EE+R +IH
Sbjct: 244 ERKISKRKEETDELKERKANGQKKIEEMRTSIH 276


>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
           protein T04H1.4a protein.
          Length = 1298

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 13  QRLLSGRKTESFQDAHHVAGLQRRLEEVRYTIH 111
           +R +S RK E+ +     A  Q+++EE+R +IH
Sbjct: 230 ERKISKRKEETDELKERKANGQKKIEEMRTSIH 262


>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
           ceRAD50 protein.
          Length = 1298

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 13  QRLLSGRKTESFQDAHHVAGLQRRLEEVRYTIH 111
           +R +S RK E+ +     A  Q+++EE+R +IH
Sbjct: 230 ERKISKRKEETDELKERKANGQKKIEEMRTSIH 262


>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
           protein T01D3.3b protein.
          Length = 1011

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 87  GRSSIHHSLSPRGNPAPVF 143
           G ++I +  SPR  P+PVF
Sbjct: 442 GNTNIQYPTSPRATPSPVF 460


>Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical
           protein T01D3.3a protein.
          Length = 802

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 87  GRSSIHHSLSPRGNPAPVF 143
           G ++I +  SPR  P+PVF
Sbjct: 233 GNTNIQYPTSPRATPSPVF 251


>Z78012-8|CAB01418.2|  945|Caenorhabditis elegans Hypothetical
           protein F57F5.2 protein.
          Length = 945

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 138 LVLGSHEDLMNGVSNFFQPALKSSDVVGVLKRFSFP 31
           L+   + DLMN +   F   +K  D +    RFS+P
Sbjct: 77  LIRNGYGDLMNVMGRRFSDFIKGLDNIHEYFRFSYP 112


>Z75953-6|CAB00103.2|  945|Caenorhabditis elegans Hypothetical
           protein F57F5.2 protein.
          Length = 945

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 138 LVLGSHEDLMNGVSNFFQPALKSSDVVGVLKRFSFP 31
           L+   + DLMN +   F   +K  D +    RFS+P
Sbjct: 77  LIRNGYGDLMNVMGRRFSDFIKGLDNIHEYFRFSYP 112


>AY275181-1|AAP32289.1|  945|Caenorhabditis elegans soluble guanylyl
           cyclase GCY-33 protein.
          Length = 945

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 138 LVLGSHEDLMNGVSNFFQPALKSSDVVGVLKRFSFP 31
           L+   + DLMN +   F   +K  D +    RFS+P
Sbjct: 77  LIRNGYGDLMNVMGRRFSDFIKGLDNIHEYFRFSYP 112


>AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of
           constitutive dauerformation protein 2 protein.
          Length = 1446

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 7/20 (35%), Positives = 16/20 (80%)
 Frame = -1

Query: 254 KVYYYLCTKTYNSIYILKLI 195
           K+ +YLC++TY+ ++ + +I
Sbjct: 475 KLRFYLCSRTYSKVWQISVI 494


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,540,786
Number of Sequences: 27780
Number of extensions: 90346
Number of successful extensions: 200
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)