Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D21
         (284 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   2.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   2.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          19   9.0  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -3

Query: 123 HEDLMNGVSNFFQPALKSSDVVGV 52
           ++DL++  +   +P + +SDV+ V
Sbjct: 33  YDDLLSNYNKLVRPVVNTSDVLRV 56


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -3

Query: 123 HEDLMNGVSNFFQPALKSSDVVGV 52
           ++DL++  +   +P + +SDV+ V
Sbjct: 33  YDDLLSNYNKLVRPVVNTSDVLRV 56


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 37  TESFQDAHHVAGLQRRLEEVRYT 105
           TE    A H+A   +    VRYT
Sbjct: 149 TEKMFVARHLAETPKNTSAVRYT 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,776
Number of Sequences: 438
Number of extensions: 966
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5619645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)