Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D21
         (284 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20240.1 68414.m02528 hypothetical protein                          27   1.5  
At5g61380.1 68418.m07701 ABI3-interacting protein 1 (AIP1) ident...    25   6.1  
At2g21950.1 68415.m02608 SKP1 interacting partner 6 (SKIP6) iden...    25   6.1  
At1g55130.1 68414.m06296 endomembrane protein 70, putative simil...    25   8.1  
At1g51610.1 68414.m05814 cation efflux family protein / metal to...    25   8.1  

>At1g20240.1 68414.m02528 hypothetical protein
          Length = 566

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -3

Query: 153 FEKEKLVLGSHEDLMNGVSNFFQPALKSSDVVGVLKRFSFPPRE 22
           ++ + LV+   +D +NGV + +   +KS +V+G  K +S   R+
Sbjct: 481 YDGKHLVVREMKDSLNGVVHVYDMEVKSWEVIGSTKSWSSRVRD 524


>At5g61380.1 68418.m07701 ABI3-interacting protein 1 (AIP1)
           identical to pseudo-response regulator 1 GI:7576354 from
           [Arabidopsis thaliana]; timing of CAB expression 1
           protein (TOC1) GI:9247019; contains Pfam profile
           PF00072:  Response regulator receiver domain; identical
           to cDNA ABI3-interacting protein 1 (aip1 gene)
           GI:6996312
          Length = 618

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 93  SSIHHSLSPRGNP 131
           S +HHS SP GNP
Sbjct: 508 SMVHHSWSPAGNP 520


>At2g21950.1 68415.m02608 SKP1 interacting partner 6 (SKIP6)
           identical to SKP1 interacting partner 6 GI:10716957 from
           [Arabidopsis thaliana]
          Length = 372

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 163 LKVL*KRKTGAGFPRGLNEWCIELLPTGVEVQRRGGR 53
           L VL + K G+G  R +  WC E     ++V RRG R
Sbjct: 312 LTVLWEGKAGSGGSRRMEIWCAE-----IDVGRRGER 343


>At1g55130.1 68414.m06296 endomembrane protein 70, putative similar
           to multispanning membrane protein GI:2276460 from [Homo
           sapiens]
          Length = 637

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -1

Query: 266 TIKLKVYYYLCTKTYNSIYILKLIFYKSQLKYC*FKSTLKKKNWCW 129
           +I L  +YY+    +    IL +   +  +  C F+   +  NWCW
Sbjct: 519 SIWLNQFYYIFGFLFIVFLILIVTCAEITIVLCYFQLCSEDYNWCW 564


>At1g51610.1 68414.m05814 cation efflux family protein / metal
           tolerance protein, putative (MTPc4) member of the cation
           diffusion facilitator (CDF) family, or cation efflux
           (CE) family, PMID:11500563
          Length = 457

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 15  TTTLWAEN*IFSXXXXXXWTSTP-VGRSSIHHSLSPRGNPA 134
           TT LW    +FS      WTS+  V  + + HS++   N A
Sbjct: 118 TTALWCNFLVFSLKFGVWWTSSSHVIMAEVVHSVADFANQA 158


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,119,176
Number of Sequences: 28952
Number of extensions: 80585
Number of successful extensions: 200
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 251821800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)