Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_D18
(618 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0097 + 9145478-9145777,9146590-9146785,9146949-9147193 33 0.14
09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801... 31 0.97
12_02_0216 + 15804110-15804284,15804341-15804351 30 1.7
12_02_0219 + 15822050-15824896 29 3.9
03_05_0517 - 25118232-25118730,25119002-25119273 28 5.2
03_02_0269 + 7001891-7002212,7003598-7004037 28 5.2
02_04_0619 - 24481641-24482291,24482426-24482640,24482770-244831... 28 6.8
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 27 9.0
11_01_0532 + 4201374-4201401,4201475-4202652,4204316-4204670,420... 27 9.0
01_07_0009 - 40397276-40397534,40397637-40398745,40398834-403989... 27 9.0
>10_05_0097 + 9145478-9145777,9146590-9146785,9146949-9147193
Length = 246
Score = 33.5 bits (73), Expect = 0.14
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +3
Query: 366 RWNTT--IVHHVNLAWIIIRVMIDHVHSVCGSHGQYGEEEKHESFHCRIV---SEKKLKN 530
RWNTT ++H + II V ID +H + G+E +H+ +V EK LK
Sbjct: 128 RWNTTYLMLHQLKGYEKIISVFIDSLHFRSNDTDEDGDENRHDRVLAYVVQPMEEKFLKY 187
Query: 531 LC*FPHFH 554
PH +
Sbjct: 188 FTAIPHLY 195
>09_02_0511 -
10079180-10079355,10079656-10079722,10080144-10080181,
10080255-10080336
Length = 120
Score = 30.7 bits (66), Expect = 0.97
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2
Query: 440 VHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNG 300
V+ V + +PG +++N+G S GN ++ N PFF SNG
Sbjct: 41 VYDVTSYVEEHPGGDEILNNAGATSKGNYALILPVNEFPFFLVYSNG 87
>12_02_0216 + 15804110-15804284,15804341-15804351
Length = 61
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -2
Query: 380 SGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 258
SG P+ +H V FF+ SN SGNY + G F
Sbjct: 12 SGSPAPPYKNHTVAGADGWFFNATSNTTSGNYSDWAAGETF 52
>12_02_0219 + 15822050-15824896
Length = 948
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 517 FSDTIRQ*KLSC-FSSSPYWPWLPQTECTWSIITLIII 407
F D +R+ ++ C F+ P WPWL +++ +++
Sbjct: 270 FGDPLRKHEMHCRFTQGPPWPWLAVASSYGTLVISLLV 307
>03_05_0517 - 25118232-25118730,25119002-25119273
Length = 256
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -2
Query: 329 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 219
D FF++ P GN T P VD P P + +
Sbjct: 37 DWFFTRKGESPQGNISKEETAPTGVDVTDPGRPGRAF 73
>03_02_0269 + 7001891-7002212,7003598-7004037
Length = 253
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 194 SHHGREGCRIAWVDNWDD*NRR 259
+ H R+ R+AW D W D +R+
Sbjct: 62 TEHARQRMRVAWADGWVDGSRK 83
>02_04_0619 -
24481641-24482291,24482426-24482640,24482770-24483154,
24483170-24483258,24485488-24485622,24485833-24487108
Length = 916
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 444 VCGSHGQYGE-EEKHESFHCRIVSEKKLKNLC*FPHFHSVVDLC 572
V GQ GE + KH+ +V+EKK K + FP ++ LC
Sbjct: 417 VGSKRGQKGELKAKHKKLFENLVAEKKRKAMSIFPSTDPLLVLC 460
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 236 YPPKRYDNPLARGGK 192
YPPKRY NP+ G+
Sbjct: 859 YPPKRYSNPVGPAGR 873
>11_01_0532 +
4201374-4201401,4201475-4202652,4204316-4204670,
4204791-4204864,4206965-4207056,4207500-4207573,
4207680-4207822,4207889-4207909
Length = 654
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -2
Query: 428 DHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGP 264
DH+ D + V+ D+S VP D + D + DP + EP+S P
Sbjct: 40 DHSDDSDSAAVNEDDDSAVPEDAD-DETLAGAEDPVLDLREAEVLPSAEPVSAFP 93
>01_07_0009 -
40397276-40397534,40397637-40398745,40398834-40398932,
40399043-40399272,40399534-40399585,40399679-40399865,
40399987-40400193,40400283-40400449,40400804-40401094,
40401166-40401636
Length = 1023
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 517 FSDTIRQ*KLSC-FSSSPYWPWLPQTECTWSIITLII 410
F D R+ ++ C F P WPWL T +++ ++
Sbjct: 367 FGDPSRKHEMHCRFEKKPPWPWLAITSSFGTLVIALL 403
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,513,186
Number of Sequences: 37544
Number of extensions: 298680
Number of successful extensions: 706
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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