Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_D17
(376 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 29 0.24
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 28 0.42
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 26 1.7
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 26 2.2
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 25 2.9
SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit L3... 25 5.1
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 25 5.1
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 24 9.0
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo... 24 9.0
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 24 9.0
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 29.1 bits (62), Expect = 0.24
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 266 CILGFTLSACFISRTRAVKPSLCSDSLSSTGVVPNVFL 153
CI GF ++ + +RTR + PS +LS T V+ FL
Sbjct: 325 CIAGFVVNEFYTTRTRIITPS-AFKTLSLTSVMVTSFL 361
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 28.3 bits (60), Expect = 0.42
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 266 CILGFTLSACFISRTRAVKPSLCSDSLSSTGVVPNVFL 153
CI GF ++ + +RTR + PS +LS + V+ FL
Sbjct: 325 CIAGFVVNELYTTRTRIIAPS-AFQTLSLSSVMVTSFL 361
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 26.2 bits (55), Expect = 1.7
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +1
Query: 184 DKESEHREG---FTALVRE--MKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDIV 348
D ES H EG F + E MK+ALN ++ +S ++ I FD I D V
Sbjct: 985 DYESHHGEGNVHFNVTLTEAGMKEALNESLEVKFKLSRTQATSNMIAFDASGRIKKYDSV 1044
Query: 349 NIQAFDYY 372
++Y
Sbjct: 1045 EDILTEFY 1052
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 25.8 bits (54), Expect = 2.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 348 DNVDQVYDAWDVKVNGAIYVWQ 283
D VD++YDAW N WQ
Sbjct: 54 DYVDEMYDAWKKDPNSVHASWQ 75
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 25.4 bits (53), Expect = 2.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 13 QARTAFTNSALLLAEQYGFDGIDLSWQLPK 102
Q T F S+L +A G+D I L W L K
Sbjct: 531 QGVTEFVPSSLGVALAKGYDEIGLEWSLTK 560
>SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 103
Score = 24.6 bits (51), Expect = 5.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 217 ALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINL 336
AL+R A++ K S LP+++ I+ PSI N+
Sbjct: 2 ALLRGNSLAISQKMLSVFQASALPHISLRIFISPPSIANI 41
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 24.6 bits (51), Expect = 5.1
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
Frame = +1
Query: 43 LLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSFWHSIKKTFGTTPVDDKESEHREGFTAL 222
++ E YG DGI+LS +R + + I KT + D FT
Sbjct: 831 IIAKEMYGADGIELSPLAKERLETFTKQGYNNLPICIAKTQYSLSHDPDLKGAPTNFTVP 890
Query: 223 VREMKQALN---VKPNMQLVISVLPNV-NSSIYFDVPSIINLVDIVNI 354
+R+M+ + + P + IS +P + Y+++ I DIV +
Sbjct: 891 IRDMRLSAGAGFIYP-LAAAISTIPGLPTKPAYYNI-DIAENGDIVGL 936
>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 23.8 bits (49), Expect = 9.0
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 274 ISVLPNVNSSIYFDVPSII 330
I+VLP+++ S + D PSI+
Sbjct: 191 INVLPSISPSSFLDSPSIM 209
>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 610
Score = 23.8 bits (49), Expect = 9.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 4 ESPQARTAFTNSALLLAEQYGFDGIDL 84
ES Q A NS LAE + FD D+
Sbjct: 517 ESAQMIDAHINSIFTLAEPFAFDAPDV 543
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 23.8 bits (49), Expect = 9.0
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
Frame = -3
Query: 215 VKPSLCSDSLSSTG--------VVPNVFLMLCQKDPILERIFF 111
+KPS +D SSTG + PN+ ++LC ++ +FF
Sbjct: 341 IKPSYSADPSSSTGASLTESPGIPPNIVIILCLIFFLIGYLFF 383
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,367,627
Number of Sequences: 5004
Number of extensions: 25185
Number of successful extensions: 88
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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