Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_D17
(376 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 38 0.003
04_03_0649 - 18402976-18403220,18403305-18404499 38 0.003
12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861 32 0.13
12_02_0239 - 16125105-16126025,16126966-16127415 31 0.39
08_01_0192 + 1594530-1594682,1594755-1594955,1595051-1595280,159... 30 0.52
12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718 29 1.2
12_02_0237 - 16087083-16087201,16087531-16088341,16097713-16098156 28 2.1
02_05_0272 - 27348537-27348728,27349035-27349192,27349292-273493... 28 2.1
07_01_0465 + 3513296-3513631,3514386-3514442,3515196-3515306,351... 27 3.6
04_04_1358 + 32869222-32869306,32869947-32870008,32870301-328703... 27 3.6
05_03_0086 + 8279518-8280320,8280923-8281844 27 4.8
02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237 27 6.3
01_04_0103 + 16046012-16046018,16046214-16046366,16046908-160471... 27 6.3
08_01_1069 + 10916376-10916448,10917331-10918031,10918222-109184... 26 8.4
06_03_1494 + 30554997-30555608,30555707-30555915,30556006-305561... 26 8.4
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513... 26 8.4
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 37.9 bits (84), Expect = 0.003
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +1
Query: 19 RTAFTNSALLLAEQYGFDGIDLSWQLP 99
R AF NS++ LA GFDG+DL+W+ P
Sbjct: 139 RRAFINSSIELARANGFDGLDLAWRFP 165
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 37.5 bits (83), Expect = 0.003
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +1
Query: 10 PQARTAFTNSALLLAEQYGFDGIDLSWQLP 99
P +R AF +A+ +A + GFDG+D++W+ P
Sbjct: 141 PASRAAFIGAAVKVARENGFDGLDVAWRFP 170
>12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861
Length = 443
Score = 32.3 bits (70), Expect = 0.13
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 220 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 345
LVR+ K + K NMQL++ +LP Y V I DI
Sbjct: 340 LVRKAKHEMKTKENMQLMVDLLPLWREKPYIKVERIFETCDI 381
>12_02_0239 - 16125105-16126025,16126966-16127415
Length = 456
Score = 30.7 bits (66), Expect = 0.39
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +1
Query: 130 IGSFWHSIKKTFGTTPVDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIY 309
+G + + + T V + + E LVR+ K + + NMQL++ V+P Y
Sbjct: 310 LGYYGNGLMYPIVETTVKELCTNPLEHTIELVRKAKHKIRTEENMQLMVDVMPLWYEKPY 369
Query: 310 FDVPSIINLVDI 345
V I DI
Sbjct: 370 IKVQRIFETCDI 381
>08_01_0192 +
1594530-1594682,1594755-1594955,1595051-1595280,
1595596-1595766,1595902-1596007,1596339-1596545,
1596638-1596802
Length = 410
Score = 30.3 bits (65), Expect = 0.52
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 31 TNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSFW 144
T +L+ E + FD L+W + R P +I++++ +W
Sbjct: 339 TKKMILVGEVFRFDLDTLTWSVIGRMPFRIKTALAGYW 376
>12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718
Length = 490
Score = 29.1 bits (62), Expect = 1.2
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 220 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 345
LVR+ K + + NMQL + +LP Y V I DI
Sbjct: 381 LVRKAKDEMKTEENMQLRVDLLPLWREKPYIKVQRIFEACDI 422
>12_02_0237 - 16087083-16087201,16087531-16088341,16097713-16098156
Length = 457
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 220 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 345
LVR+ K + ++ NMQL + +LP Y + I DI
Sbjct: 338 LVRKAKDEMMIEENMQLRVDLLPLWREKPYIKLQRIFETCDI 379
>02_05_0272 -
27348537-27348728,27349035-27349192,27349292-27349323,
27349420-27349514,27349614-27349687,27349800-27349878,
27350015-27350078,27350156-27350218,27350300-27350442,
27350566-27350703,27350792-27350913,27350993-27351158,
27351276-27351398,27351609-27351680,27351773-27351880,
27352481-27352597,27352727-27352865,27352974-27353080,
27353167-27353276,27353892-27354025,27354106-27354255,
27354329-27354549,27354647-27355318
Length = 1092
Score = 28.3 bits (60), Expect = 2.1
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = +1
Query: 175 PVDDKESEHREGFTALVREMKQALNV-KPN---MQLVISVLPNVNSSIYFDVPSI 327
P+ EH E AL ++A+N+ KP + L+I++LP+ N S+Y D+ I
Sbjct: 660 PLVTARPEHVE--RALKARYQEAMNILKPQGGELDLLIAILPDNNGSLYGDLKRI 712
>07_01_0465 +
3513296-3513631,3514386-3514442,3515196-3515306,
3515466-3515552,3515627-3515740,3515850-3516056,
3516291-3516428,3516691-3516852,3516939-3517138,
3517429-3517554,3517644-3517785
Length = 559
Score = 27.5 bits (58), Expect = 3.6
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +1
Query: 184 DKESEHREGFT---ALV-----REMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIIN 333
+KE+ H EGF+ ALV +E+++ L V+P + +++ + Y D+P +IN
Sbjct: 139 EKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTKWIQSYRDLPLMIN 196
>04_04_1358 +
32869222-32869306,32869947-32870008,32870301-32870393,
32870640-32870761,32873139-32873167,32873586-32873891,
32873977-32874035,32874148-32874279,32874414-32874455,
32874560-32875093,32875189-32875379,32875538-32876027,
32876273-32876335,32876704-32876805,32876895-32877215,
32877294-32877386,32877484-32877585,32877718-32877822,
32877933-32878066,32878429-32878612,32879226-32879357,
32879447-32879559,32879628-32879709,32880328-32881992
Length = 1746
Score = 27.5 bits (58), Expect = 3.6
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +1
Query: 4 ESPQARTAFTNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSFW-HSIKKTFGTTPV 180
+ P ++ N A L + D + +P P+ IR +GS W +++K
Sbjct: 569 QCPTPQSHVDNHARKLVRKILEDSLMKLENMPANNPRTIRWELGSSWLQNLQKKDSPASE 628
Query: 181 DDKESEHREGFTAL 222
D K + H E T +
Sbjct: 629 DKKNAGHVEKETTI 642
>05_03_0086 + 8279518-8280320,8280923-8281844
Length = 574
Score = 27.1 bits (57), Expect = 4.8
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +1
Query: 1 LESPQARTAFTNSALLLAEQYGFDGIDLSWQLPKR-KPKKIRSSIGSFWHSIKKTFGTTP 177
++ P R AFT A + + FDG+ +W L + P + + F TTP
Sbjct: 480 VKEPHKRIAFTRGATEIKQHPFFDGV--NWALVRSLTPPSVPEPV-DFRQYAAAASATTP 536
Query: 178 VDDKESEH 201
D K E+
Sbjct: 537 KDKKPPEN 544
>02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237
Length = 572
Score = 26.6 bits (56), Expect = 6.3
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +1
Query: 124 SSIGSFWHSIKKTFGTTPVDDKESEHREGFTALVREMKQALNVKPNMQLVISVL 285
++I SF ++ + G D ESE + + + EM +A ++ P M + ISV+
Sbjct: 65 ATISSFANADNGSSGQA--DATESEEEQNGESELSEMAKAFHISPRMAMSISVV 116
>01_04_0103 +
16046012-16046018,16046214-16046366,16046908-16047158,
16047509-16047631,16047818-16047931,16048153-16048315,
16048867-16049462
Length = 468
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 196 EHREGFTALVREMKQALNVKPNMQLVI-SVLPNVNSSIYFDVPSIINL 336
E+++G ++ + ++ P + + SVLP + S+ Y+ VPSI+ L
Sbjct: 289 ENQKGNSSAGHKTPKSPLAAPRCEAIAESVLPRLYSADYYTVPSIVEL 336
>08_01_1069 +
10916376-10916448,10917331-10918031,10918222-10918443,
10918526-10919351,10919437-10919574,10920431-10920569,
10920655-10920781,10921895-10921936,10922089-10922160,
10922491-10922589,10922694-10922735,10922947-10923027,
10923129-10923179,10923265-10923346,10923741-10923835,
10924739-10924810,10924907-10925023,10925176-10925244,
10925507-10925573,10925709-10925950
Length = 1118
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 22 TAFTNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSSI 132
TAF S +L+ + D ID+ W R PK+ R+ +
Sbjct: 300 TAFIRSNILMLNR---DEIDILWDAKDRFPKEFRAEV 333
>06_03_1494 +
30554997-30555608,30555707-30555915,30556006-30556155,
30556254-30556312,30556852-30556961,30557216-30557322,
30557443-30557581,30557705-30557821,30557918-30558025,
30558221-30558292,30558783-30558948,30559044-30559165,
30559245-30559382,30559462-30559604,30559699-30559761,
30560107-30560170,30560238-30560373,30560478-30560551,
30560640-30560734,30560829-30560860,30560973-30561175
Length = 972
Score = 26.2 bits (55), Expect = 8.4
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Frame = +1
Query: 142 WHSIKKTFGTTPV-DDKESEHREGFTALVREMKQALNV----KPNMQLVISVLPNVNSSI 306
W+ + K F PV + + AL A+N+ + L+I +LP+ N S+
Sbjct: 556 WNMMNKDFALEPVLPSMYARPDQVERALKARFHDAMNILGPQHKELDLLIGLLPDNNGSL 615
Query: 307 YFDVPSIINL 336
Y D+ I +
Sbjct: 616 YGDLKRICEI 625
>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
5139967-5140289,5141373-5142479,5142593-5143279,
5144214-5144522,5145488-5145823,5146165-5146263,
5146676-5146940,5146950-5147104,5147666-5149723,
5150168-5150367,5150662-5150718,5150965-5151079
Length = 1985
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 31 TNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSS 129
T +A++L ++YG + LPK++ KKI+ S
Sbjct: 1550 TKAAVILEQKYGLQLDQDTSDLPKKRGKKIKLS 1582
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,542,532
Number of Sequences: 37544
Number of extensions: 150092
Number of successful extensions: 428
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -