Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_D16
(573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 137 9e-34
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 120 2e-28
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 93 3e-20
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 85 9e-18
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 43 4e-05
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 41 1e-04
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 40 3e-04
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 37 0.002
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 36 0.003
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 34 0.017
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 33 0.022
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 32 0.052
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 32 0.052
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 32 0.069
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 32 0.069
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 31 0.091
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 30 0.21
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 29 0.37
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 29 0.37
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 29 0.48
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 29 0.64
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 28 0.84
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 28 1.1
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 27 2.0
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 27 2.0
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.6
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces... 25 6.0
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 7.9
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 25 7.9
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 25 7.9
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po... 25 7.9
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 137 bits (332), Expect = 9e-34
Identities = 65/119 (54%), Positives = 87/119 (73%), Gaps = 1/119 (0%)
Frame = +3
Query: 216 MGLLISKIW-NLFGNEEHKLVLVGLDNAGKTTILYQLLLGEAVHTRPTIGSNVEEVVWRN 392
MGL ISK++ +LFG E ++++VGLD AGKTTILY+L LGE V T PTIG NVE V +RN
Sbjct: 1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRN 60
Query: 393 LRFVMWDLGGQQSLRSAWNTYYTNSEFVIMVIDSTDRQRLSISREELHRMLTHEELSKA 569
+ F +WD+GGQ +R W Y+ N++ +I V+DS DR+R+S + EEL RML +EL A
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDA 119
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 120 bits (288), Expect = 2e-28
Identities = 50/105 (47%), Positives = 79/105 (75%)
Frame = +3
Query: 246 LFGNEEHKLVLVGLDNAGKTTILYQLLLGEAVHTRPTIGSNVEEVVWRNLRFVMWDLGGQ 425
LF N+E +++++GLD AGKTTILY+L L ++V T PT+G NVE V ++N++F +WD+GGQ
Sbjct: 16 LFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQ 75
Query: 426 QSLRSAWNTYYTNSEFVIMVIDSTDRQRLSISREELHRMLTHEEL 560
+R W Y+T ++ +I V+DS D R+S +R+ELHR+++ E+
Sbjct: 76 DKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREM 120
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 93.1 bits (221), Expect = 3e-20
Identities = 47/115 (40%), Positives = 66/115 (57%)
Frame = +3
Query: 216 MGLLISKIWNLFGNEEHKLVLVGLDNAGKTTILYQLLLGEAVHTRPTIGSNVEEVVWRNL 395
MGLL E +++L+GLDNAGKTTIL LL + PT G + + L
Sbjct: 1 MGLLTILRQQKLKEREVRVLLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGL 60
Query: 396 RFVMWDLGGQQSLRSAWNTYYTNSEFVIMVIDSTDRQRLSISREELHRMLTHEEL 560
RF +WD+GGQ++LR+ W Y+ ++E +I V+DS D RL R L +L E+L
Sbjct: 61 RFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKL 115
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 84.6 bits (200), Expect = 9e-18
Identities = 40/104 (38%), Positives = 61/104 (58%)
Frame = +3
Query: 255 NEEHKLVLVGLDNAGKTTILYQLLLGEAVHTRPTIGSNVEEVVWRNLRFVMWDLGGQQSL 434
N+ K++ +GLDNAGKTT+L+ L +PT+ EE+ N+RF +DLGG Q
Sbjct: 18 NKHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQA 77
Query: 435 RSAWNTYYTNSEFVIMVIDSTDRQRLSISREELHRMLTHEELSK 566
R W Y+ ++ ++D D +RLS S+ EL +L EEL++
Sbjct: 78 RRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELAR 121
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 42.7 bits (96), Expect = 4e-05
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Frame = +3
Query: 249 FGNEEHKLVLVGLDNAGKTTILYQLLLGEAVHT-RPTIGSN-VEEVVW---RNLRFVMWD 413
F + KLV +G + GKT+++ + + + +T + TIG + + + ++ R +R +WD
Sbjct: 7 FSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 66
Query: 414 LGGQQSLRSAWNTYYTNSEFVIMVIDSTD 500
GQ+ RS +Y +S I+V D T+
Sbjct: 67 TAGQERFRSLIPSYIRDSSVAIIVYDITN 95
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 40.7 bits (91), Expect = 1e-04
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Frame = +3
Query: 267 KLVLVGLDNAGKTTILYQLLLGEAVHTRP---TIGSNVE----EVVWRNLRFVMWDLGGQ 425
KL+L+G GK+ +L L + +T TIG + + E+ + ++ +WD GQ
Sbjct: 10 KLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQ 67
Query: 426 QSLRSAWNTYYTNSEFVIMVIDSTDRQRLSISREELHRM 542
+ R+ ++YY + +I+V D TD+ + ++ L +
Sbjct: 68 ERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEI 106
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 39.9 bits (89), Expect = 3e-04
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Frame = +3
Query: 267 KLVLVGLDNAGKTTILYQLLLGEAVHTR-PTIGSNVEEVVWRN----LRFVMWDLGGQQS 431
KLVLVG GKTT + + L GE T+G V + + + F +WD GQ+
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 432 LRSAWNTYYTNSEFVIMVIDSTDR 503
L + YY + I++ D T R
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSR 94
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 36.7 bits (81), Expect = 0.002
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Frame = +3
Query: 267 KLVLVGLDNAGKTTILYQLLLGEA-VHTRPTIGSN--VEEVVWRN--LRFVMWDLGGQQS 431
K VL+G GK+ +L + E + ++ TIG +V N ++ +WD GQ+
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 432 LRSAWNTYYTNSEFVIMVIDST 497
R+ + YY + ++V D T
Sbjct: 72 YRAITSAYYRGAVGALIVYDIT 93
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 36.3 bits (80), Expect = 0.003
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Frame = +3
Query: 267 KLVLVGLDNAGKTTILYQLLLGEAVHTR-PTIGSNVE----EVVWRNLRFVMWDLGGQQS 431
KL+L+G GK+ +L + + TIG + + E+ + ++ +WD GQ+
Sbjct: 11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 70
Query: 432 LRSAWNTYYTNSEFVIMVIDSTDRQ 506
R+ YY + ++++ D TD++
Sbjct: 71 FRTITTAYYRGAMGILLLYDVTDKK 95
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 33.9 bits (74), Expect = 0.017
Identities = 22/87 (25%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Frame = +3
Query: 252 GNEEH--KLVLVGLDNAGKTTILYQLLLGE-AVHTRPTIGSN--VEEVVWRN--LRFVMW 410
G ++H K++++G GKT+I+ Q + + + + TIG++ +EV+ + + +W
Sbjct: 3 GKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLW 62
Query: 411 DLGGQQSLRSAWNTYYTNSEFVIMVID 491
D GQ+ +S +Y ++ ++V D
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVYD 89
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 33.5 bits (73), Expect = 0.022
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Frame = +3
Query: 267 KLVLVGLDNAGKTTILYQLLLGE-AVHTRPTIG----SNVEEVVWRN----LRFVMWDLG 419
K+VL G GK+ +L + + + T+G S + V N ++ +WD
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTA 70
Query: 420 GQQSLRSAWNTYYTNSEFVIMVIDSTDR 503
GQ+ RS YY + ++V D T++
Sbjct: 71 GQEKFRSVARNYYRGAAGAVLVYDVTNK 98
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 32.3 bits (70), Expect = 0.052
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Frame = +3
Query: 267 KLVLVGLDNAGKTTILYQLLLGEAVHTR-PTIGSNVE---EVVWRNLRFVMWDLGGQQSL 434
KLV+VG GKT +L G PT+ N EV R++ +WD GQ+
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDY 67
Query: 435 RSAWNTYYTNSEFVIM--VIDSTD 500
Y +S +++ +DS D
Sbjct: 68 DRLRPLSYPDSHVILICFAVDSPD 91
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 32.3 bits (70), Expect = 0.052
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Frame = +3
Query: 267 KLVLVGLDNAGKTTILYQLLLGE-AVHTRPTIGSNVE---EVVWRNLRFVMWDLGGQQSL 434
KLV+VG GKT++L LG PT+ N V ++++ +WD GQ+
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEY 69
Query: 435 RSAWNTYYTNSEFVIM--VIDSTD 500
Y + +++ IDS D
Sbjct: 70 ERLRPMSYAKAHIILVGFAIDSPD 93
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 31.9 bits (69), Expect = 0.069
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Frame = +3
Query: 267 KLVLVGLDNAGKTTILYQLLLGEAVHTRP-TIGSNVEEVVW-----RNLRFVMWDLGGQQ 428
KLVL+G GK++++ + + + R TIG+ +++ +WD GQ+
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 429 SLRSAWNTYYTNSEFVIMVIDSTDRQRL 512
+S YY N+ I+V D T L
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASL 103
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 31.9 bits (69), Expect = 0.069
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Frame = +3
Query: 267 KLVLVGLDNAGKTTILYQLLLGEA-VHTRPTIGSNVEE--VVWRN--LRFVMWDLGGQQS 431
K+ ++G + GKT+++ + G + T+G N E + RN + F +WDLGGQ+
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQRE 71
Query: 432 LRSAWNTYYTNSEFVIMVIDSTDRQRLSISRE 527
+ ++ ++ + D + + L+ +E
Sbjct: 72 FVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE 103
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 31.5 bits (68), Expect = 0.091
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +3
Query: 267 KLVLVGLDNAGKTTILYQLLLGEAVHTR-PTIGSNVE---EVVWRNLRFVMWDLGGQQSL 434
KLV+VG GKT +L G PT+ N EV R++ +WD GQ+
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 435 RSAWNTYYTNSEFVIMVIDSTD 500
Y +S V+++ S D
Sbjct: 68 DRLRPLSYPDSH-VVLICFSVD 88
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 30.3 bits (65), Expect = 0.21
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Frame = +3
Query: 276 LVGLDNAGKTTILYQLLLGEAVHTRPTIGSNVEEVVWRNLRFVMWDLGGQQSLRSAWNTY 455
L+G ++GKT++ +L+ E T P+I N E VW+ +++ DL G + T
Sbjct: 42 LIGPSDSGKTSLFCELIYKEKKTTVPSIEPN--EAVWKYGAWLV-DLPGHPRAKRWITTK 98
Query: 456 YT---NSEFVIMVIDSTDRQR 509
++ N + V+ V++S R
Sbjct: 99 FSGNYNVKAVVFVLNSATIDR 119
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 29.5 bits (63), Expect = 0.37
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Frame = +3
Query: 261 EHKLVLVGLDNAGKTTILYQLLLGEAV-HTRPTIGSNVE---EVVWRNLRFVMWDLGGQQ 428
E+KLV+VG GK+ + QL+ V PTI + E+ + D GQ+
Sbjct: 8 EYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQE 67
Query: 429 SLRSAWNTYYTNSEFVIMVIDSTDR 503
+ Y E ++V + T R
Sbjct: 68 EYSAMREQYMRTGEGFLLVYNITSR 92
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 29.5 bits (63), Expect = 0.37
Identities = 19/78 (24%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Frame = +3
Query: 267 KLVLVGLDNAGKTTILYQLLLGE-AVHTRPTIGSN--VEEVVWRN--LRFVMWDLGGQQS 431
K+V++G GKT ++ Q + + + + TIG++ ++VV + + +WD GQ+
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQER 69
Query: 432 LRSAWNTYYTNSEFVIMV 485
+S +Y ++ ++V
Sbjct: 70 FQSLGMAFYRGADCCVIV 87
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 29.1 bits (62), Expect = 0.48
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 420 GQQSLRSAWNTYYTNSEFVIMVIDSTDRQRLSISREELH 536
G S+ S + T TNS+ V+ D+TD S+S+ EL+
Sbjct: 520 GYSSVTSGYGT--TNSKKVVASYDNTDDNEYSVSKSELY 556
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 28.7 bits (61), Expect = 0.64
Identities = 17/70 (24%), Positives = 30/70 (42%)
Frame = +3
Query: 354 TIGSNVEEVVWRNLRFVMWDLGGQQSLRSAWNTYYTNSEFVIMVIDSTDRQRLSISREEL 533
T+G + +L+ M+D+GGQ++ R W + N +I + D + R
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYERAAP 238
Query: 534 HRMLTHEELS 563
R E +S
Sbjct: 239 ERNRLVESIS 248
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 28.3 bits (60), Expect = 0.84
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Frame = +3
Query: 267 KLVLVGLDNAGKTTILYQLLLGEAVHTR-PTIGSN-VEEVVW----RNLRFVMWDLGGQQ 428
KLV+VG GKT +L G PT+ N + ++ + + + +WD GQ+
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 429 SLRSAWNTYYTNSEFVIM 482
Y NS +++
Sbjct: 76 EYDRLRPLSYPNSNVILL 93
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 27.9 bits (59), Expect = 1.1
Identities = 21/70 (30%), Positives = 31/70 (44%)
Frame = +3
Query: 198 YEGFKTMGLLISKIWNLFGNEEHKLVLVGLDNAGKTTILYQLLLGEAVHTRPTIGSNVEE 377
Y K+ + + W + N+++ LV VG DN I + L E T + G +
Sbjct: 260 YSLIKSYNFSLDRAWCIAQNKDNGLVTVGFDNG---LITFSLGRDEPSVTMDSSG----K 312
Query: 378 VVWRNLRFVM 407
VVW N VM
Sbjct: 313 VVWSNYNEVM 322
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 27.1 bits (57), Expect = 2.0
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +3
Query: 231 SKIWNLFGNEEHKLVLVGLDNAGKTTILYQLLLGEAVHTRPTIGSNVEEVVWRNLRFVMW 410
SK L GN+ K+ + L+ TIL +L+ ++ + +N++E+ W++ R
Sbjct: 113 SKKKGLNGNDPKKVFEIALNG---NTILGGILVAYILYNVLSPNANMQEITWQDFRQQFL 169
Query: 411 DLG 419
D G
Sbjct: 170 DKG 172
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 252 GNEEHKLVLVGLDNAGKTTILYQLLL 329
G + K++L+G ++GKTTI+ Q+ L
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRL 96
Score = 25.0 bits (52), Expect = 7.9
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 333 EAVHTR-PTIGSNVEEVVWRNLRFVMWDLGGQQSLRSAWNTYYTNSEFVIMVI 488
+ +H R T G + E + + +D+GGQ+S R W + N ++ ++
Sbjct: 213 DILHCRIKTTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLV 265
>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 26.6 bits (56), Expect = 2.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 198 YEGFKTMGLLISKIWNLFGNEEHKLV 275
Y G+K + ++S WNL + HKL+
Sbjct: 49 YTGYKGVTFIVSTKWNLTVDSIHKLI 74
>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 25.4 bits (53), Expect = 6.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 82 LFTYFCCNIFDRRYSYYSLGFRHKLRI 2
LFTY+ C D+ + Y + HKL I
Sbjct: 152 LFTYYLCKFKDQEHIYTLIFKLHKLLI 178
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 315 YQLLLGEAVHTRPTIGSNVEEVVWRNLRF 401
Y LLL + V T P+I N ++V+ +F
Sbjct: 95 YSLLLTQPVFTMPSIEHNTIQLVFEEFQF 123
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.0 bits (52), Expect = 7.9
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 270 LVLVGLDNAGKTTILYQLLLGEAVHTRPTIGSNVEEVVWRNLRF 401
+++VG+ +GKTT + QL +P N++ V RNL +
Sbjct: 11 IIVVGMAGSGKTTFMQQLNAHLHSKNKPPYILNLDPAV-RNLPY 53
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.0 bits (52), Expect = 7.9
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 183 SFFSLYEGFKTMGLLISKIWNLFGNEEHKLVLVGLDNAGKTTILYQLLL 329
SF SLY FK + ++++N + + V +G N T+ +L L
Sbjct: 1354 SFISLYPNFKFFNKIQTQVFNSV-YKTNDSVFIGAPNGSGKTVCAELAL 1401
>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 211 RQWACLYRRFGTCLGMKNTSWFW-LA*IMPVKLPYSINYCLVKLYIQDLQ*VPM 369
+++ + + GT +G S +W L I+ L +NYC+++ + + P+
Sbjct: 96 KKYTASFDQSGT-IGFDKESTYWKLEKILDKDLDMDVNYCIIRFTVPSVLKAPI 148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,101,954
Number of Sequences: 5004
Number of extensions: 39436
Number of successful extensions: 157
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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