Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_D15
(690 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 37 0.003
SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ... 36 0.006
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 31 0.16
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos... 30 0.27
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 29 0.63
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 29 0.63
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 28 1.1
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 1.9
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 27 1.9
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.4
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 3.4
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 27 3.4
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 26 4.5
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa... 26 4.5
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 26 4.5
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 4.5
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 26 5.9
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 26 5.9
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 26 5.9
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 5.9
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 25 7.8
SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma... 25 7.8
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 25 7.8
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 25 7.8
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +3
Query: 243 RTQILNLEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKKL 380
+T+I NLEKE++ + DKE + Q ++L+ E L EHS Q L
Sbjct: 1520 KTEISNLEKEIHELRSDKEGLVQQVQNLSAELAAL-REHSPTQGSL 1564
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 243 RTQILNLEKELNREKKDKEAVKSQAESLNKEY 338
+ + NLE +L+ ++D +K+Q ES N+EY
Sbjct: 799 KADLSNLESKLSSLQQDNFHMKAQIESSNQEY 830
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 243 RTQILNLEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKKLT 383
+ ++ N KEL + + EA++ + ESL +L E S +++T
Sbjct: 1436 KQELTNKNKELTSKNAENEAMQKEIESLKDSNHQLQESASSDAEQIT 1482
>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 35.9 bits (79), Expect = 0.006
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +3
Query: 27 FRAQRNFYISGFALFLLVVIRRLVQMISELAMLLAQAEANYRQAQSATTTARSL 188
F AQRN Y+ G ALFL +V+ R + + + +A Q +++T A+++
Sbjct: 98 FYAQRNLYLCGSALFLSLVVNRYYLALEAMIAAQDKMQALQTQVEASTNNAKAV 151
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = +3
Query: 261 LEKELNREK--KDKEAVKSQAESLNKEYDRLAEEHSKLQK 374
+E N K ++ E ++++ E+ +KEY+ LAE+++ + K
Sbjct: 141 VEASTNNAKAVEELETLRTKLETRDKEYETLAEKYAAVTK 180
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 31.1 bits (67), Expect = 0.16
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 246 TQILNLEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKK-LTVTSGGDSKKDE*M 422
T IL+ E L RE+ +K ++ + +L EY+ + E LQ + L + S + +
Sbjct: 786 TAILSFEDSLRRERDEKSTLQQKCLNLQYEYENVRIELENLQSRALELESALEQSVSDAK 845
Query: 423 YQFILSCTGL 452
Y + +GL
Sbjct: 846 YSKAIMQSGL 855
>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 196
Score = 30.3 bits (65), Expect = 0.27
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +3
Query: 261 LEKELNREKKDKEAVKSQAESLNKEYDRLAEEH-SK-LQKKLTVT-SGGDSKKD 413
LE+ L+ +KK+K K AESL +YD + E+ SK K L T S DSKKD
Sbjct: 90 LERPLSNKKKEKNDHK--AESLKHDYDSVGEKRISKDSVKHLDKTYSSIDSKKD 141
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 29.1 bits (62), Expect = 0.63
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 264 EKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKK 377
EK +EKKDK+ K + + D +EE K +KK
Sbjct: 456 EKPSKKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKK 493
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 29.1 bits (62), Expect = 0.63
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +3
Query: 261 LEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKKLT 383
LEK+L+ KKD++ + S+ + L K+Y + ++ + L+
Sbjct: 949 LEKKLSSIKKDEQTISSKYKELEKDYLNIMADYQHSSQHLS 989
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +3
Query: 246 TQILNLEKELNREKKDKEAVKSQAES 323
+++LNLEK+L KD++AVKS+ ES
Sbjct: 1603 SKVLNLEKDL----KDRQAVKSEEES 1624
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 264 EKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKKLTVTSGGDSKK 410
EKE R+KK + + + E +E +RLAE+ + QK L +++K
Sbjct: 593 EKEKKRDKKKQLKLAKEEERQRREAERLAEQAA--QKALEAKRQEEARK 639
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 276 NREKKDKEAVKSQAESLNKE-YDRLAEEHSKLQKKLTVT 389
+++KK K+ KSQ + LN+E Y RL + LQK L ++
Sbjct: 58 SKKKKKKKLKKSQ-QPLNEENYPRLQTTENNLQKPLKIS 95
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 303 QPPCLSFLCSVPFPNSK 253
QP CL+F CS+ NSK
Sbjct: 299 QPACLAFACSLTHANSK 315
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 261 LEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKL 368
L+ ELN K +K+ K E L E D+L E +L
Sbjct: 750 LKGELNASKGEKDLRKRTQERLISENDKLLAERERL 785
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +3
Query: 246 TQILNLEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKKLTVTSGGDSKKD 413
++I E EL+ A+ S+A+ LNK L + L K + TS +KK+
Sbjct: 335 SKISEKENELSEILPKYNAIVSEADDLNKRIMLLKNQKQSLLDKQSRTSQFTTKKE 390
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 264 EKELNREKKDKEAVKSQAESLNKEYDRL-AEEHS 362
+KE E + KEA++ E ++YD+L E HS
Sbjct: 528 DKERQEELRRKEAMQKIEEQSKRDYDKLHGEGHS 561
>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +3
Query: 246 TQILNLEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKKLTVTSGGDSKKDE*MY 425
T + +L+KEL EKK ++K++ ++ ++ + L K+L D +DE Y
Sbjct: 94 TIVKDLKKELENEKKANHSLKNELLKTREQIKNYSKINI-LIKELFGLEVADCIEDEDGY 152
Query: 426 QFILSCTG 449
+F TG
Sbjct: 153 RFNCKNTG 160
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 249 QILNLEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKKLT 383
++ +EKEL KD+ A ++ + L +E D L +Q KL+
Sbjct: 279 RLSTIEKELEELSKDQTADQAISRRLERERDELDLRLLDIQNKLS 323
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +3
Query: 249 QILNLEKELNREKKDKEAVKSQAESLNKEYDRLAEEHS----KLQKKLTVTSG 395
QI +L +L++ K + E+V + ESL L E H+ L KKL G
Sbjct: 695 QIESLNDQLSQLKTEMESVTTSKESLADYLSNLKERHNDELDSLNKKLREFEG 747
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Frame = +2
Query: 416 INVSIYFVLHRSDFLFRS------YGNYLLMQHKYT 505
+ +S+ FVLH FL+ S YGNY + YT
Sbjct: 146 VEISLRFVLHFVSFLYNSSFISHIYGNYDVFSTLYT 181
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 264 EKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKKL 380
+KE R K++KE + + E +E +++A + K +KL
Sbjct: 92 QKEAERLKREKERQQREQEKKLREQEKIAAKKMKELEKL 130
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +3
Query: 264 EKELNREKK---DKEAVKSQAESLNKEYDRLAEEHSKLQKK 377
++EL + K+ D E K+Q E +N+EY L + LQK+
Sbjct: 548 DEELAKAKQISLDIETNKAQTEQVNREYSILEATLNALQKQ 588
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = +3
Query: 252 ILNLEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKKLTV 386
+ +LE+E +K+ ++ K + E N++ R + ++QKK+T+
Sbjct: 383 VKHLEREYILDKQKQKKEKHRIERKNRDAFRALLQDLRVQKKITL 427
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 264 EKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKKLTVTSGGDSKK 410
++E +++KK+K K + + L K+ RL + S QK+ +SKK
Sbjct: 140 KREKSKKKKEK---KEKKDKLKKKSKRLKLDDSHTQKRKRKVRDKESKK 185
>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 111
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 249 QILNLEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKKL 380
+I EKEL REK+++ A ++ ++ E LQ KL
Sbjct: 47 EIKEREKELKREKEEQRAAHAEKIRTRRQAKADRERMELLQAKL 90
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +3
Query: 261 LEKE-LNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKK 377
LE+E NRE +K+ ++++ + L E +R +E + +KK
Sbjct: 108 LEQERFNRELLEKKRIEAERQRLKDEEERRKKELMEKEKK 147
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 246 TQILNLEKELNREKKDKEAVKSQAESLNKEYDRLAEEHSKLQKK 377
T+I+N EL + KD + + + + +YDR KLQ+K
Sbjct: 126 TRIVNPTGELLKIVKDVDKLLLKRDHKQLDYDRHRSSFKKLQEK 169
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,391
Number of Sequences: 5004
Number of extensions: 43284
Number of successful extensions: 162
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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