Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D14
         (90 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0152 - 1168928-1169377                                           41   2e-04
11_01_0155 - 1287003-1287452                                           41   2e-04
07_03_1473 + 26756338-26757583,26759067-26759472,26760867-267609...    25   6.3  

>12_01_0152 - 1168928-1169377
          Length = 149

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 18/28 (64%), Positives = 20/28 (71%)
 Frame = +3

Query: 6  REPIQAVQVFGRKKTATAVAYCKRGHGV 89
          R P   VQ FGRKKTA AV+YCK G G+
Sbjct: 7  RPPPGTVQCFGRKKTAVAVSYCKPGRGL 34


>11_01_0155 - 1287003-1287452
          Length = 149

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 18/28 (64%), Positives = 20/28 (71%)
 Frame = +3

Query: 6  REPIQAVQVFGRKKTATAVAYCKRGHGV 89
          R P   VQ FGRKKTA AV+YCK G G+
Sbjct: 7  RPPPGTVQCFGRKKTAVAVSYCKPGRGL 34


>07_03_1473 +
           26756338-26757583,26759067-26759472,26760867-26760930,
           26760975-26761055,26763350-26763588,26763689-26763947,
           26764359-26764538,26764937-26765092,26765174-26765350
          Length = 935

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 41  TAENLYGLDWFTS 3
           T + LY LDWFTS
Sbjct: 735 TLDKLYNLDWFTS 747


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,651
Number of Sequences: 37544
Number of extensions: 21027
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 14,793,348
effective HSP length: 11
effective length of database: 14,380,364
effective search space used: 258846552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)