Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D14
         (90 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...    44   2e-05
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)            40   3e-04
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...    40   3e-04

>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B)
          similar to 40S ribosomal protein S16 GB:AAD22696
          [Arabidopsis thaliana]
          Length = 146

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = +3

Query: 18 QAVQVFGRKKTATAVAYCKRGHGV 89
          ++VQ FGRKKTATAV YCKRG G+
Sbjct: 8  ESVQCFGRKKTATAVTYCKRGSGM 31


>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 16/24 (66%), Positives = 20/24 (83%)
 Frame = +3

Query: 18 QAVQVFGRKKTATAVAYCKRGHGV 89
          ++VQ FGRKKTA AV +CKRG G+
Sbjct: 8  ESVQCFGRKKTAVAVTHCKRGSGL 31


>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same
          as GB:Q42340
          Length = 146

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 16/24 (66%), Positives = 20/24 (83%)
 Frame = +3

Query: 18 QAVQVFGRKKTATAVAYCKRGHGV 89
          ++VQ FGRKKTA AV +CKRG G+
Sbjct: 8  ESVQCFGRKKTAVAVTHCKRGSGL 31


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,077,692
Number of Sequences: 28952
Number of extensions: 16018
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 12,070,560
effective HSP length: 11
effective length of database: 11,752,088
effective search space used: 211537584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)