Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D13
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    28   0.69 
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   1.2  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    27   1.6  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    27   1.6  
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo...    27   2.1  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    25   6.4  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    25   8.4  

>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = -2

Query: 475 NSSGCWVSAI--GAIAVVVEALTYCXXXXXXXXXXXXFLMTNPSATS 341
           NSSGCW   I   A+ V+++AL Y                T P  TS
Sbjct: 71  NSSGCWAPKIFERAVIVIIDALRYDFLIPYNDSNYYHNAFTTPYETS 117


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = +2

Query: 104  SLISEVDTTATAVQCYYCNSANNSACIDLAKLDDETRSRVIPIVNCETAIPQPVAQ 271
            +L  E +T+   +      +    AC +  +  +   S +IP+VN +  I Q V Q
Sbjct: 1322 TLAKEAETSEERIYILLTGNLIGQACEEAVQSQNNRLSTLIPLVNSDVDIQQEVKQ 1377


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -2

Query: 325 GIPIGVENRLYDLSAEEVLSDR--LWYGGLTVHNRYYP*TSFIIEFRE 188
           GIP+    +   +  EEV  +R  +W  G    N YY  TS I  FR+
Sbjct: 579 GIPMMYNGQELAMRGEEVPYNRPAIWEKGFPKRNPYYKFTSTINRFRK 626


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 140 VQCYYCNSANNSACIDLAKLDDETRSRVIPIVNCET 247
           ++C+ C+  N+        +DD T ++ +P+  CET
Sbjct: 137 LECFRCHDCNSLVASKFFPIDDPTLNKQVPL--CET 170


>SPAC18G6.06 |||U3 snoRNP-associated protein
           Utp11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 338 TRGCGWVRHEKDCYKADNSDHLETVCQCFNDHCN 439
           T+  GW+RH ++  +A   DHLE        H N
Sbjct: 97  TQDIGWIRHHRNVERA-KIDHLEQQMHTVGAHRN 129


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 261 LSLRTSSAERSYRRFSTPIGIP 326
           L+L T  AER    F TP GIP
Sbjct: 163 LTLATELAERLLPAFRTPTGIP 184


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 368 KDCYKADNSDHLETVCQCFNDHCNS 442
           KD Y ++    L+ VCQ    H NS
Sbjct: 512 KDQYSSNQFSSLKNVCQYIEHHINS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,751,017
Number of Sequences: 5004
Number of extensions: 32480
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)