Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_D13
(500 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0319 - 4291144-4293402 31 0.52
02_05_0602 + 30283893-30284170,30286259-30286305,30286534-302875... 29 2.8
11_01_0593 - 4705565-4705822,4705916-4706065,4706160-4706307,470... 28 3.7
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589... 28 4.8
02_05_1264 + 35321972-35322448,35323022-35323252,35323903-353245... 28 4.8
03_02_0170 + 6119667-6119912,6120032-6120169,6120311-6120421,612... 27 6.4
02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,369... 27 8.5
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490... 27 8.5
>04_01_0319 - 4291144-4293402
Length = 752
Score = 31.1 bits (67), Expect = 0.52
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 320 DSEVRVTRGCGWVRHEKDC 376
D E+R GCGW+RHE C
Sbjct: 351 DRELRPVWGCGWIRHEVLC 369
>02_05_0602 + 30283893-30284170,30286259-30286305,30286534-30287510,
30287611-30287920,30288561-30290197
Length = 1082
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 185 RCKQSCSHCYSSSIVPP*RSCPLHLSNCLP 96
R K + H +SSS PP CP+H C P
Sbjct: 911 RLKDARVHNHSSSKNPPLNVCPVHRGVCTP 940
>11_01_0593 -
4705565-4705822,4705916-4706065,4706160-4706307,
4706400-4706479,4706573-4706739,4706830-4707078,
4707161-4707733,4707833-4707972,4708064-4708185,
4708622-4708743,4708877-4709105
Length = 745
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 249 PYHSLSLRTSSAERSYRRFSTPI 317
PYHS S T + RSYR+ T +
Sbjct: 198 PYHSASTMTETPRRSYRKLLTSV 220
>03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,
5890540-5890710,5890840-5891007,5891139-5891234,
5891777-5891839,5891949-5892114,5892207-5892274,
5892646-5892789,5893111-5893176,5893329-5893520,
5894567-5894657,5895241-5895329,5895521-5895583,
5895698-5895823,5895902-5895991,5896059-5896181,
5896503-5896619,5896704-5896904,5897643-5897723,
5897897-5897977,5898083-5898184,5898264-5898488,
5898571-5898726,5898798-5899010,5899306-5899455,
5900082-5900204,5900299-5900364,5900555-5900620,
5900686-5900817,5900891-5900965,5901355-5901438,
5901516-5901668,5901741-5901806,5902044-5902205,
5902272-5902388,5902495-5902566,5902702-5902761,
5902869-5902985,5904131-5904430,5904518-5904622,
5905710-5905775,5905853-5906297,5906399-5906567,
5906684-5906736,5906819-5906925
Length = 1981
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 404 LGDRCYQLYSNLSHDEPIRNLASHVLRNPDRS 309
LG++ YQ SH PI+ A HVL + D +
Sbjct: 1268 LGNKTYQDLYRFSHFNPIQTQAFHVLYHSDNN 1299
>02_05_1264 +
35321972-35322448,35323022-35323252,35323903-35324565,
35324698-35324806,35324965-35325383
Length = 632
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 302 IFHSYRDSEVRVTRGCGWVRHEKDCYKADNSDHLETVCQCF 424
+FHS R + + T WV HE AD + L VC+ F
Sbjct: 131 VFHSGRAPKGQRTN---WVMHEYRLLDADGTQDLHVVCRIF 168
>03_02_0170 +
6119667-6119912,6120032-6120169,6120311-6120421,
6120621-6120828,6120938-6121019,6121239-6121347,
6122175-6122291,6122378-6122602
Length = 411
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 380 KADNSDHLETVCQCFNDHCNSAD 448
+AD DH E Q + + CNS+D
Sbjct: 74 RADAGDHTEAFLQAWKEACNSSD 96
>02_01_0509 +
3694689-3695683,3695799-3695946,3696864-3696943,
3697214-3698062,3698193-3698337,3698426-3698677,
3698780-3699089,3699415-3699524
Length = 962
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 353 WVRHEKDCYKADNSDHLETVCQCFNDHCNS 442
W E D D S ++T+ + +NDH NS
Sbjct: 249 WFTAEADLAPDDRSRRMKTLQRLYNDHLNS 278
>01_05_0104 +
18148396-18148642,18148797-18148886,18148972-18149072,
18149174-18149287,18149381-18149462,18149592-18149659,
18149747-18149806,18149885-18150009,18150663-18150861,
18150942-18151073,18151152-18151244,18151360-18152244,
18152339-18152664,18153003-18153341,18153911-18153996,
18154054-18154139
Length = 1010
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = +2
Query: 245 TAIPQPVAQDFFCRKIIQTIFHSYRDSEVRVTRGCGWVRHEKDCYKADNSDHLETVCQ 418
++I Q F + I+ + + EV R + E +C+K N D ET+ +
Sbjct: 468 SSIRQSATAPFMLKHEIRKLEQLQQQLEVEANRAIEVLHKEVECHKHGNQDAAETIAK 525
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,496,940
Number of Sequences: 37544
Number of extensions: 215650
Number of successful extensions: 564
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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