Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D13
         (500 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22843| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_33381| Best HMM Match : RVT_1 (HMM E-Value=0.025)                   27   8.7  
SB_25410| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_18943| Best HMM Match : DUF753 (HMM E-Value=5.9)                    27   8.7  

>SB_22843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1138

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
 Frame = -1

Query: 245  SHSSQS-VLPVNEFHHRVSRDR--CKQSCSHCYSSSIVPP*RSCPLHLSNCLPT 93
            SH+S+S +   +EF+ R  R R   K +C H    S++   RSCPLH ++ L T
Sbjct: 1084 SHASRSRITNFDEFYPRRRRARHLVKNACDH----SVL---RSCPLHSNDQLAT 1130


>SB_33381| Best HMM Match : RVT_1 (HMM E-Value=0.025)
          Length = 537

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 107 LISEVDTTATAVQCYYCNSANNSACID 187
           LIS + + ++A QC+Y + A  S  +D
Sbjct: 271 LISRLSSASSAKQCWYADDATGSGSLD 297


>SB_25410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 350 GWVRHEKDCYKADNS 394
           GWVR  + CYKAD +
Sbjct: 8   GWVRLNRSCYKADQT 22


>SB_18943| Best HMM Match : DUF753 (HMM E-Value=5.9)
          Length = 676

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 414 VNASTTTAIAPXALTQQPLLFY 479
           +N S  TAI P  +T  PLLFY
Sbjct: 267 LNLSLETAIDPSEVTPPPLLFY 288


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,525,536
Number of Sequences: 59808
Number of extensions: 255044
Number of successful extensions: 791
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)