Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D13
         (500 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52640.2 68416.m05800 nicastrin-related contains weak similar...    32   0.19 
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ...    30   1.0  
At2g05120.1 68415.m00539 expressed protein                             29   1.3  
At5g40720.1 68418.m04942 expressed protein contains Pfam profile...    27   5.4  
At3g10390.1 68416.m01245 amine oxidase family protein / SWIRM do...    27   5.4  
At5g58190.2 68418.m07284 expressed protein contains Pfam profile...    27   7.1  
At2g07560.1 68415.m00875 ATPase, plasma membrane-type, putative ...    27   7.1  

>At3g52640.2 68416.m05800 nicastrin-related contains weak similarity
           to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
           sapiens]
          Length = 705

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = -1

Query: 302 SSV*SFCRRSPERQAVVWRSHSSQSVLPVNEFHHRVSRDRCKQSCSHCYSS 150
           SS+ +F R++P+  AVV     +  V   N+F+H    D CK+S S  +SS
Sbjct: 404 SSLMAFMRKNPQTSAVVLEDFDTNFV---NKFYHSHLDDLCKKSHSLSFSS 451


>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
           protein low similarity to nucleolar phosphoprotein
           (Nopp52), Tetrahymena thermophila, EMBL:TT51555;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 597

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
 Frame = +2

Query: 146 CYYCNSANN--SAC-IDLAKLDDETRSRV-IPIVNCETA-----IPQPVAQDFFCRKIIQ 298
           CY C    +  +AC I L K DD+  S++    V+   A     +P+     ++  +   
Sbjct: 397 CYECGEKGHLSTACPIKLQKADDQANSKLGQETVDGRPAMQSYGLPKNSGDSYYMNETYA 456

Query: 299 TIFHSYRDSEVRVTRGCGWVRHEKDCYKADNSDHLETVC 415
           +   +Y         G G V+  ++CY+     HL T C
Sbjct: 457 STNETYNGGYSASAVGTGKVKR-RNCYECGEKGHLSTAC 494


>At2g05120.1 68415.m00539 expressed protein 
          Length = 1234

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 240 VRPPYHSLSLRTSSAERSYRRFS--TPIGIPKYV*REVAD 353
           V PP  SLS + SS ERS R  +  TP G+ +   RE +D
Sbjct: 521 VEPPERSLSRKNSSNERSTRDETRVTPYGVDRTAGRENSD 560


>At5g40720.1 68418.m04942 expressed protein contains Pfam profile
           PF01697: Domain of unknown function
          Length = 583

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 356 PIRNLASHVLRNPDRSGKSSV*SFCRRS-PERQAVVWRSHSSQSVLPVNEFHH 201
           P  +     LR+P RSG ++  + CR + PER   + R  S  + L +N  HH
Sbjct: 399 PCHSFGPSGLRDPPRSGVTAAYT-CRMALPERHKSIIRPESLNATL-INVVHH 449


>At3g10390.1 68416.m01245 amine oxidase family protein / SWIRM
           domain-containing protein contains Pfam profile: PF01593
           Flavin containing amine oxidase
          Length = 789

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 334 TYFGIPIGVENRLYDLSAEEVLSDRLWYGGLTVHNRY 224
           +Y  + +G     YD+ AE V   RL++ G     RY
Sbjct: 565 SYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRY 601


>At5g58190.2 68418.m07284 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 528

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = -1

Query: 275 SPERQAVVWRSHSSQSVLPVNEFHHRVSRDRCKQSCSHCYSSSIVPP*RSCPLHLSNCLP 96
           S +R  +V  S   + V+  N    +VS D  +   S  YSSS+VP     P +  N L 
Sbjct: 9   SNQRNRIV--SSGERPVMADNGVQQQVSHDDGRNIVSSSYSSSVVPSPDPAPYY--NVLQ 64

Query: 95  T*SN 84
           T +N
Sbjct: 65  TPTN 68


>At2g07560.1 68415.m00875 ATPase, plasma membrane-type, putative /
           proton pump, putative similar to P-type
           H(+)-transporting ATPase from [Phaseolus vulgaris]
           GI:758250, [Lycopersicon esculentum] GI:1621440,
           SP|Q03194 {Nicotiana plumbaginifolia}, [Solanum
           tuberosum] GI:435001; contains InterPro accession
           IPR001757: ATPase, E1-E2 type
          Length = 949

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 275 FFCRKIIQTIFHSYRDSEVRVTRGCGW 355
           FF  ++I T+  +Y   E    +GCGW
Sbjct: 793 FFVAQLIATLIATYAHWEFARIKGCGW 819


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,190,496
Number of Sequences: 28952
Number of extensions: 173059
Number of successful extensions: 459
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)