Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_D11
(504 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 176 1e-44
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 174 3e-44
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 152 2e-37
09_02_0235 + 6122145-6122206,6122408-6122417,6123515-6123549,612... 31 0.40
11_06_0007 - 19171122-19172036 29 2.8
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526... 28 3.7
04_01_0014 - 231228-233179,233522-233714 27 6.5
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 27 8.6
06_01_0637 + 4635136-4635969 27 8.6
02_02_0545 - 11376016-11378307 27 8.6
01_06_0763 + 31800556-31800618,31800659-31800802,31800859-318009... 27 8.6
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 176 bits (428), Expect = 1e-44
Identities = 75/145 (51%), Positives = 107/145 (73%)
Frame = +3
Query: 24 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIP 203
+Y+V+GR LP+ ++ P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+I++I EI
Sbjct: 8 QYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIF 67
Query: 204 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHPIQIIK 383
EK+P IKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQIIK
Sbjct: 68 EKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127
Query: 384 VEVIKAAACRRPQVKQFHTSKDRFP 458
+ C+R KQFH S +FP
Sbjct: 128 TATVHFKLCKRDNTKQFHKSDIKFP 152
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 174 bits (424), Expect = 3e-44
Identities = 73/145 (50%), Positives = 106/145 (73%)
Frame = +3
Query: 24 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIP 203
+Y+V+GR LP+ + P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G++++I EI
Sbjct: 8 QYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 67
Query: 204 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHPIQIIK 383
E++P IKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQIIK
Sbjct: 68 ERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127
Query: 384 VEVIKAAACRRPQVKQFHTSKDRFP 458
+ C+R KQFH S +FP
Sbjct: 128 TATVHFKLCKRDNTKQFHNSNIKFP 152
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 152 bits (368), Expect = 2e-37
Identities = 72/162 (44%), Positives = 105/162 (64%), Gaps = 17/162 (10%)
Frame = +3
Query: 24 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRF----------W-------YFLRQL 152
+Y+V+GR LP+ + P +Y+M++++ + + AKS+F W YFLR+L
Sbjct: 8 QYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFCSSYLVRFADWGACPVCRYFLRKL 67
Query: 153 KKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYR 332
KK KK+ G++++I EI E++P IKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y
Sbjct: 68 KKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYT 127
Query: 333 DMGARHRARAHPIQIIKVEVIKAAACRRPQVKQFHTSKDRFP 458
+M +RHR R IQIIK + C+R KQFH +FP
Sbjct: 128 EMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNGSIKFP 169
>09_02_0235 +
6122145-6122206,6122408-6122417,6123515-6123549,
6124422-6124842,6124978-6125412
Length = 320
Score = 31.5 bits (68), Expect = 0.40
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = -2
Query: 299 QVTVFTVHIVDTRARLVTQPDTKVLNLNRTLFWNFLDGYNFTSSLFELLQLPQEIPE 129
+++ F V I +L+ P+T VLNL + +F+ T+ L E L +P+ I E
Sbjct: 185 EISDFDVLIGHPIEKLIDVPETGVLNLKIEIIISFVPVLQSTNCLMEPLPIPEPIKE 241
>11_06_0007 - 19171122-19172036
Length = 304
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = -3
Query: 478 GERVMVAGNRSLLVWNCLTCGRRHAAALITST--LMICIGCARALCLAPISL 329
G V V G R W C CG R AA L+ L +C C P+ L
Sbjct: 242 GGGVGVGGGR----WGCKACGEREAAVLLLPCRHLCLCRACEARAEACPVCL 289
>08_01_0600 -
5262573-5262773,5262850-5262952,5263050-5263180,
5263263-5263312,5265266-5265725,5266349-5266708
Length = 434
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/69 (23%), Positives = 33/69 (47%)
Frame = +3
Query: 126 RFWYFLRQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSV 305
++W + TGE+ S+K I +K +++ +G ++ + S +G + + Y +
Sbjct: 103 QYWMDENYISACFAPTGELQSVKLIRDKQTGQLQGYG-FIEFTSHAGAERVLQTYNGAMM 161
Query: 306 GGAVTQCYR 332
V Q YR
Sbjct: 162 PN-VEQTYR 169
>04_01_0014 - 231228-233179,233522-233714
Length = 714
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -3
Query: 139 KYQKRDFATIGSGEKILILYRGGFGSLSEGSLRPMT 32
+Y D AT EK L GGFGS+ +G LR +T
Sbjct: 407 RYSDLDHATKNFSEK---LGEGGFGSVFKGVLRDLT 439
>06_03_0912 +
25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 65 AKASSIQNEDFLS*SYCGKISFLVFLEAVEEVQKD-YW*NCIH 190
+++ +Q FL+ S+C ++ L FLE E Q D Y N +H
Sbjct: 613 SQSGGLQKLSFLNVSHCSQLVKLSFLEEKLEKQPDHYLPNMVH 655
>06_01_0637 + 4635136-4635969
Length = 277
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 103 GEKILILYRGGFGSLSEGSLRPMTSYSFNSPFA 5
G IL LY G F + +G P+T YS P A
Sbjct: 202 GLTILELYTGSFPLVEQGQSIPLTCYSDGPPEA 234
>02_02_0545 - 11376016-11378307
Length = 763
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/69 (23%), Positives = 28/69 (40%)
Frame = +1
Query: 184 YPSRKFQKRVLLRLRTLVSGCVTSLALVSTICXXXXXXXXXXXQSLSAIEIWELDTELVH 363
Y +R + VLL LR + GC + ++ + +S + L T+L+
Sbjct: 635 YTTRTIAEAVLLELRVCLRGCASDKEVLDRLKAVAETATASSPESGIHVHGARLWTQLMV 694
Query: 364 IQYRSSKWK 390
I + WK
Sbjct: 695 IPDQEMTWK 703
>01_06_0763 +
31800556-31800618,31800659-31800802,31800859-31800980,
31801742-31801807,31801891-31801998,31802226-31802292,
31802716-31802800,31803169-31803329,31803490-31803591,
31803807-31804029,31804155-31804300
Length = 428
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 111 IVAKSRFWYFLRQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVH 272
+V K LR+L + E+V +E+PE P+K ++ + LR +R H
Sbjct: 353 LVCKEAAMQPLRRLMSVLEARDELVPEEELPEVGPLKPEDIEVALR-NTRPSAH 405
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,344,300
Number of Sequences: 37544
Number of extensions: 268455
Number of successful extensions: 831
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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