Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_D11
(504 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB) 184 2e-47
At1g29965.1 68414.m03664 60S ribosomal protein L18A (RPL18aA) JRW 184 2e-47
At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC) si... 179 9e-46
At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containi... 32 0.19
At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family prote... 30 0.77
At2g35200.1 68415.m04317 expressed protein 30 0.77
At1g26870.1 68414.m03277 no apical meristem (NAM) family protein... 29 1.3
At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 fam... 28 3.1
At5g49770.1 68418.m06164 leucine-rich repeat transmembrane prote... 28 4.1
At3g03070.1 68416.m00303 NADH-ubiquinone oxidoreductase-related ... 28 4.1
At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family prote... 27 5.4
At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like fami... 27 5.4
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 27 7.2
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 27 7.2
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 27 7.2
At5g58575.1 68418.m07339 expressed protein 27 9.5
At5g04700.1 68418.m00478 hypothetical protein 27 9.5
>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
Length = 178
Score = 184 bits (449), Expect = 2e-47
Identities = 78/145 (53%), Positives = 110/145 (75%)
Frame = +3
Query: 24 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIP 203
+Y+V+GR LP+E + +P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G++++I EI
Sbjct: 8 QYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIY 67
Query: 204 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHPIQIIK 383
EK+P IKNFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQIIK
Sbjct: 68 EKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127
Query: 384 VEVIKAAACRRPQVKQFHTSKDRFP 458
+ A C+R KQFH SK +FP
Sbjct: 128 TATVPAKLCKRESTKQFHNSKIKFP 152
>At1g29965.1 68414.m03664 60S ribosomal protein L18A (RPL18aA) JRW
Length = 178
Score = 184 bits (449), Expect = 2e-47
Identities = 77/147 (52%), Positives = 112/147 (76%)
Frame = +3
Query: 18 LKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKE 197
L +Y+V+GR LP+E + +P +Y+M++++ + ++AKS+FWY+LR+ KK KK+ G++++I E
Sbjct: 6 LHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAINE 65
Query: 198 IPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHPIQI 377
I EK+P IKNFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQI
Sbjct: 66 IFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQI 125
Query: 378 IKVEVIKAAACRRPQVKQFHTSKDRFP 458
IK + A+ C+R KQFH SK +FP
Sbjct: 126 IKTATVPASLCKRESTKQFHNSKIKFP 152
>At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC)
similar to GB:CAA08791 from [Podocoryne carnea]
Length = 178
Score = 179 bits (436), Expect = 9e-46
Identities = 75/145 (51%), Positives = 108/145 (74%)
Frame = +3
Query: 24 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIP 203
+Y+V+GR LP+E++ P +Y+M+++ + + AKS+FWYF+R+LKK KK+ G++++I EI
Sbjct: 8 QYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIF 67
Query: 204 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHPIQIIK 383
EK+P IKN+GIWLRY+SR+G HNMY+EYRD ++ G V Q Y +M +RHR R IQIIK
Sbjct: 68 EKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIK 127
Query: 384 VEVIKAAACRRPQVKQFHTSKDRFP 458
+ A C+R KQFH SK +FP
Sbjct: 128 TATVPAKLCKREITKQFHNSKIKFP 152
>At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 867
Score = 32.3 bits (70), Expect = 0.19
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 69 KPPLYKMRIFSPDPIVAKSRFWYFL-RQLKKFKKTTGEIVSIKEIPEKSPV 218
+PP++ R +P PI +++RF + Q + +T E +S E P K+ V
Sbjct: 11 RPPIFLHRFINPKPISSQTRFLHPPDNQSRDISDSTTETISTLEFPHKTSV 61
>At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family protein
contains Pfam profile: PF04615 Utp14 protein
Length = 858
Score = 30.3 bits (65), Expect = 0.77
Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +3
Query: 150 LKKFKKTTGEIVSIKEIPE-KSPVKIKNFGIWLRYESRSGVHN-MYREYRD 296
+++F+K E+++ +E+PE + PV + +G W + + G+ + M RE+ D
Sbjct: 679 VEEFEKDKQEVLN-QEVPEPEKPVLVPGWGQWTNVQKKRGLPSWMVREHED 728
>At2g35200.1 68415.m04317 expressed protein
Length = 201
Score = 30.3 bits (65), Expect = 0.77
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 93 IFSPDPIVAKSRFWYFLRQLKKFKKT 170
+FSP P+ +K WYF +K F+++
Sbjct: 160 LFSPTPVTSKGNGWYFPSPIKVFRQS 185
>At1g26870.1 68414.m03277 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to GB:AAD22369, NAM stands for No Apicla
Meristem
Length = 425
Score = 29.5 bits (63), Expect = 1.3
Identities = 21/56 (37%), Positives = 27/56 (48%)
Frame = +3
Query: 6 AKGELKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTT 173
AKG ++ + +LPS SEP PP R F D V+ + W R KK TT
Sbjct: 136 AKGVKTDWMMHEFRLPSLSEPSPP--SKRFF--DSPVSPNDSWAICRIFKKTNTTT 187
>At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 family
protein similar to PHO1 protein [Arabidopsis thaliana]
GI:20069032; contains Pfam profiles PF03105: SPX domain,
PF03124: EXS family
Length = 784
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 220 LTGLFSGISLMDTISPVVFLNFFNCLKKYQK 128
LT LF G++ + T + L F N LKK+ K
Sbjct: 293 LTELFKGLNYLKTYRNLNILAFMNILKKFDK 323
>At5g49770.1 68418.m06164 leucine-rich repeat transmembrane protein
kinase, putative
Length = 946
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2
Query: 233 KVLNLNRTLFWNFLDGYNFTSSLFELLQLPQEIPETRFCHNRIRRENP 90
K+ + TL DG FT S+ E L L Q + R NR+ + P
Sbjct: 215 KLFSSEMTLLHVLFDGNQFTGSIPESLGLVQNLTVLRLDRNRLSGDIP 262
>At3g03070.1 68416.m00303 NADH-ubiquinone oxidoreductase-related
contains weak similarity to NADH-ubiquinone
oxidoreductase 13 kDa-A subunit, mitochondrial precursor
(EC 1.6.5.3) (EC 1.6.99.3) (Complex I-13KD-A)
(CI-13KD-A) (Swiss-Prot:P23934) [Bos taurus]
Length = 110
Score = 27.9 bits (59), Expect = 4.1
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +3
Query: 240 WLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHPIQIIKVEVIKAAACR 413
W++ S+ + E + V G + C D A HPI+ I +++ + A C+
Sbjct: 44 WMQDRSKKSPMELISEVPPIKVDGRIVACEGDTNP---ALGHPIEFICLDLNEPAICK 98
>At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family protein
contains Pfam profile: PF04615 Utp14 protein
Length = 822
Score = 27.5 bits (58), Expect = 5.4
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Frame = +3
Query: 159 FKKTTGEIVSIKEIPE-KSPVKIKNFGIWLRYESRSGV-HNMYREYRDLSVGGAVTQCYR 332
F+K E+++ +E+PE + PV++ +G W +++ G+ + RE+ + + R
Sbjct: 665 FEKDKQEVLN-QEVPEPEKPVQVAGWGHWTNNQNKRGLPSRIVREHEE-------AKKTR 716
Query: 333 DMGARHRARAHPIQIIKVEVI--KAAACRRPQVKQFHTSKDRFPATITRSPI 482
+ R R A +I E + KA + + +TSK+ F ++ R PI
Sbjct: 717 EQALRKRKDASFKHVIISEKVDKKAEKLQTKSLPYPYTSKEVFEQSM-RMPI 767
>At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like family
protein contains Pfam profile PF04091: Exocyst complex
subunit Sec15-like
Length = 771
Score = 27.5 bits (58), Expect = 5.4
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
Frame = +3
Query: 42 RKLPSESEPKPPLYKMRIF-----SPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIPE 206
RK +P+ L+ ++ F S V K+ + F+ + K ++ S+K
Sbjct: 45 RKTFGTGKPETLLHHLKFFARSKESEIEEVCKAHYQDFIHAVDDLKSLLSDVESLKSALS 104
Query: 207 KSPVKIKNFGIWLRYESRSGVH-NMYREYRDLSVGGAVTQCYRDMGARHRARAH 365
S K+++ L S V + DL++G AVT C R M RA H
Sbjct: 105 DSNSKLQSVAAPLLSSLDSLVEAQTVSKNVDLAIG-AVTHCVRVMELVSRANQH 157
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 445 LLVWNCLTCGRRHAAALITSTLMIC 371
L+VWN LT + HA L + +M C
Sbjct: 89 LIVWNALTSQKTHAIKLPCAWVMTC 113
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 445 LLVWNCLTCGRRHAAALITSTLMIC 371
L+VWN LT + HA L + +M C
Sbjct: 27 LIVWNALTSQKTHAIKLPCAWVMTC 51
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 445 LLVWNCLTCGRRHAAALITSTLMIC 371
L+VWN LT + HA L + +M C
Sbjct: 89 LIVWNALTSQKTHAIKLPCAWVMTC 113
>At5g58575.1 68418.m07339 expressed protein
Length = 181
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 439 VWNCLTCGRRHAAALITSTLMICIGCAR 356
V+NC+ CGR+ A L C+G R
Sbjct: 92 VFNCMNCGRQIVAGRFAPHLEKCMGKGR 119
>At5g04700.1 68418.m00478 hypothetical protein
Length = 669
Score = 26.6 bits (56), Expect = 9.5
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Frame = +3
Query: 174 GEIVS-IKEIPEKSPVKIKNFGIWLRY-ES-------RSGVHNMYREYRDLSVG---GAV 317
G+ VS IKE+PE+ V I + + ES R N+Y EY LS G G V
Sbjct: 34 GDSVSPIKEVPEEEEVPNDPVNIQIPFIESALSTSRLRGKNTNVYYEYIQLSQGISQGRV 93
Query: 318 TQCYRDMGARHRARAHP-IQIIKVEVIKAAACRRPQV 425
+ +D H I + + ++KA AC +P++
Sbjct: 94 -EIVKDFLNHHPDSVDEWINLYETPLLKACACGKPEI 129
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,728,012
Number of Sequences: 28952
Number of extensions: 216275
Number of successful extensions: 652
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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