Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D10
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    26   0.37 
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    25   0.64 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   6.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.9  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 139 KIKSVYVSSCHLNFKFTP*DEREALI 216
           K  ++Y SSC +N ++ P DE+  ++
Sbjct: 149 KPPAIYKSSCEINVEYFPFDEQSCIM 174


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -1

Query: 383 VACEPLEFGFCLGDMFCSFTYVRNVKIYKNKSNMAIYEMNIEFSR-ICTSASHN 225
           +A + ++ G   G +     Y +N+K+Y    N+ I   NI++ + I +S S+N
Sbjct: 70  LAVDSVKIGESQGSVTLRQEY-KNIKLYGLTKNLEIKNYNIDWDKCILSSESYN 122


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +1

Query: 139 KIKSVYVSSCHLNFKFTP*DEREALI 216
           K  ++Y SSC ++ ++ P DE+  ++
Sbjct: 144 KPPAIYKSSCEIDVEYFPFDEQTCVL 169


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 565 LQLWDIAGLP-PSMRWRSGKRPGHKGPAAGR 654
           ++L D+   P PS+R RSG   G   P  GR
Sbjct: 370 IELQDLRMSPLPSIRNRSGLVSGSSTPGTGR 400


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +1

Query: 139 KIKSVYVSSCHLNFKFTP*DEREALI 216
           K  ++Y SSC ++ ++ P DE+  ++
Sbjct: 140 KPPAIYKSSCEIDVEYFPFDEQTCVM 165


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 636 FVSRSFSTSPPHRRWQPRD 580
           F+  S  TSPP   W+P D
Sbjct: 407 FLIGSRRTSPPPEDWKPLD 425


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +1

Query: 151 VYVSSCHLNFKFTP*DEREALI 216
           ++ SSC ++ +F P DE+  ++
Sbjct: 126 IFRSSCDIDVEFFPFDEQRCVL 147


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 609 PPHRRWQP 586
           PPHR W+P
Sbjct: 101 PPHRLWKP 108


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 148 SVYVSSCHLNFKFTP*DEREALI 216
           +VY SSC ++ +F P D +  ++
Sbjct: 147 AVYKSSCSIDVEFFPYDVQTCVL 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,599
Number of Sequences: 438
Number of extensions: 3578
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)