Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D09
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   1.3  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   2.3  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    27   3.1  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    26   5.4  
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ...    25   9.4  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    25   9.4  

>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 273 PYCMDSCQNADHYCPNCNSYLGT 341
           PY +++C N   Y  NCNS L T
Sbjct: 203 PYLVNTCFNGTQYPVNCNSALRT 225


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 397  MLSCN-CYMIEYRLKIIITLLYDYHLMFALFLEIFRNLKPLNIVLYD 534
            MLSCN   +I   +  +  L+Y  ++ FA+F+ +      +N V ++
Sbjct: 1018 MLSCNNASLIRVSMDTVCALIYQLNVDFAIFIPMIDKCLKMNGVTHE 1064


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 640  FIRSNFL*ISLPVKFITAMKFXQTNSYYNFNDHFSNHTKQ 521
            F+ ++F+      +    +K   TN +YN  ++ SNH KQ
Sbjct: 1249 FLLTDFMSAQTVYQIDIQVKELLTNCFYNVYENLSNHEKQ 1288


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 508 KPLNIVLYDLKNDH*NYNNYSFVQ 579
           KP+N +LY   N    Y+N+ FVQ
Sbjct: 140 KPVNFLLYQPFNSGKYYHNWQFVQ 163


>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 307

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +1

Query: 430 RLKIIITLLYDYHLMFALFLEIFRNLKPLNIVLYDLKNDH*NYNNYSFVQIS 585
           RL   IT++ D H  F   LEIFR   P     Y    D+ +   YS   I+
Sbjct: 41  RLSTPITVVGDIHGQFDDLLEIFRIGGPCPYTNYLFLGDYVDRGYYSIETIT 92


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 210 TKTHVIALLLCLFLCWPCVCVPYCMDSCQNADHYCPNCNSYLGT 341
           T   +  +++C F      CVP C+ +   AD Y P  N Y GT
Sbjct: 223 TAQDIQTIMICRFFGGYGACVPLCVVAAAFADMY-P--NRYRGT 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,616,500
Number of Sequences: 5004
Number of extensions: 53950
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)