Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D09
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)                       34   0.11 
SB_43504| Best HMM Match : Urotensin_II (HMM E-Value=0.05)             31   0.81 
SB_31769| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_12923| Best HMM Match : zf-C3HC4 (HMM E-Value=1.1)                  29   2.5  
SB_38537| Best HMM Match : VWA (HMM E-Value=0)                         29   3.3  
SB_33453| Best HMM Match : BRF1 (HMM E-Value=1.4)                      29   3.3  
SB_44424| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_34539| Best HMM Match : SIR2 (HMM E-Value=1.7)                      29   4.3  
SB_3065| Best HMM Match : HD (HMM E-Value=0.018)                       29   4.3  
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)                   29   4.3  
SB_58060| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)                 28   5.7  
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)               28   5.7  
SB_32366| Best HMM Match : Kinesin (HMM E-Value=0)                     27   9.9  
SB_43987| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_19269| Best HMM Match : Pkinase (HMM E-Value=2.4e-38)               27   9.9  

>SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)
          Length = 323

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 170 SGHYSDQGQPQSYH*NPRHRAPPMFVFVLAVCMCTVL 280
           S H+  Q Q Q +  +PRHR PP+ + ++ +    ++
Sbjct: 103 SHHHHQQQQQQQHRHHPRHRRPPLIIIIIVIIYIIII 139


>SB_43504| Best HMM Match : Urotensin_II (HMM E-Value=0.05)
          Length = 444

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 430 CILSYNNYKITYKSHEKFI*FNVQDCYCWYVPKYE 326
           C+  Y  Y  TY  + +++  +  DCYC YV  Y+
Sbjct: 56  CMNGYCRYVSTYDCYSRYV--STYDCYCRYVSTYD 88



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 418 YNNYKITYKSHEKFI*FNVQDCYCWYVPKYE 326
           Y+ Y  TY  + +++  +  DCYC YV  Y+
Sbjct: 70  YSRYVSTYDCYCRYV--STYDCYCRYVSTYD 98



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -3

Query: 430 CILSYNNYKITYKSHEKFI*F-NVQDCYCWYVPKYELQLG 314
           C+  Y  Y  TY     +  + +  DCYC YV  Y+   G
Sbjct: 161 CMNGYCRYVSTYDCMNGYCRYVSTYDCYCRYVSTYDCMNG 200



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -3

Query: 430 CILSYNNYKITYKSHEKFI*F-NVQDCYCWYVPKYELQLG 314
           C+  Y  Y  TY     +  + +  DCYC YV  Y+   G
Sbjct: 311 CMNGYCRYVSTYDCMNGYCRYVSTYDCYCRYVSTYDCMNG 350


>SB_31769| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 272 YTYTR-PAQKQT*EERDDVGFSGSFAVDLGHYSGPT*RAHQVSGIRTDRRDIHC 114
           +T+ R P  + T   R  VGF+  F V   H+S      H V G+ T +  +HC
Sbjct: 79  FTFHRHPVAQSTDSIRAKVGFNRGFHVWEIHWSTRQRGTHAVVGVATAKAPLHC 132


>SB_12923| Best HMM Match : zf-C3HC4 (HMM E-Value=1.1)
          Length = 166

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 144 PANLVCPSCRATIVTKVNRKATTKTHVIALLLCLF 248
           P    CP C+  IVT+ + K+   T+  +  LC+F
Sbjct: 42  PVYTTCPFCQEKIVTRTSFKSGKYTYWTSACLCIF 76


>SB_38537| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1174

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 93  ITSFLITTMNIAPVGPNPANLVCPSCRATIVTKVNRKA 206
           + SF  T ++ +       NLVCP+ R + +T++N K+
Sbjct: 14  VVSFYATLLSFSFAQAQTQNLVCPTVRTSALTQLNCKS 51


>SB_33453| Best HMM Match : BRF1 (HMM E-Value=1.4)
          Length = 412

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 367 NVQDCYCWYVPKYELQLGQ*WSAFWQESIQYGTHTHGQHKNKHRRS 230
           +V+ C+C Y P    Q GQ        + Q   HT  Q  +KH+RS
Sbjct: 107 DVRRCFCRYAPPLAEQEGQLIETEATGAPQKHHHTLNQSHSKHKRS 152


>SB_44424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1350

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 109 IKNDVIAPIPETPLIINTAKFVDLDFYNKN*HNH 8
           +  D+ AP PE PL    + F  + + N+   NH
Sbjct: 621 VPEDLFAPYPEVPLFSVYSSFTGVQYANRTNENH 654


>SB_34539| Best HMM Match : SIR2 (HMM E-Value=1.7)
          Length = 1384

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 109 IKNDVIAPIPETPLIINTAKFVDLDFYNKN*HNH 8
           +  D+ AP PE PL    + F  + + N+   NH
Sbjct: 37  VPEDLFAPYPEVPLFSVYSSFTGVQYANRTNENH 70


>SB_3065| Best HMM Match : HD (HMM E-Value=0.018)
          Length = 270

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -2

Query: 227 DDVGFSGSFAVDLGHYSGPT*RAHQVSGIRTDRRDIHCGD*K*RNRTYPRNASNNKYSKI 48
           DDV   G+F  D+GH  G      Q+  + TD+ DI  G    R+  +P + +N  +  +
Sbjct: 52  DDV-ILGAFFHDIGHLIGFDQGLSQMGDVGTDKHDI-VGQTYLRDLGFPDSVTNMVWGHV 109

Query: 47  R*PRFL 30
              R+L
Sbjct: 110 EAKRYL 115


>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
          Length = 1103

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 240 CLFLCWPCVCVPYCMDSCQNADHYCPNCNSYL 335
           C+  C P VC P C D C     Y PN ++++
Sbjct: 704 CIAPC-PQVCAPACSDICCGFGAYAPNPDTHV 734


>SB_58060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 863

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 157 TRLAGFGPTGAIFIVVIKNDVIAPIPETPLIINTAKFV 44
           TR+ GF P  AI +  +  +   P  E PL + T K++
Sbjct: 764 TRMTGFAPKNAIKLRRVPLEAEKPPLEVPLEVGTKKYI 801


>SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)
          Length = 1555

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 223  SSRSSYVCFCAGRVYVYRTVWILARTLTITAPTATRIWGHTNNNSL 360
            ++ +S+V  C GR     T++ + +T   T  TA   + + NNN +
Sbjct: 1494 NNNNSFVKLCQGRSTTTITIFTITKTPMTTITTALSRYVNNNNNDI 1539


>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
          Length = 474

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 258 PCVCVPYCMDSCQNADHYCPNCNSYLGTYQQ 350
           PC  V YC  +C +  +YCP C +++   Q+
Sbjct: 420 PCGHV-YCCQTCASNLYYCPLCKTFITFVQR 449


>SB_32366| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 1492

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 378  SYDLTYKTVIVGMSPNTSCSWGS-NGQRSGKNPYSTVHIHTASTK 247
            +Y +  KT +    P T C W + NG+ SG+N  ++ H H    K
Sbjct: 1402 NYPVEDKTWVRPDGP-TFCQWSTVNGKTSGENSATSPHFHEPPPK 1445


>SB_43987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -3

Query: 319 LGQ*WSAFWQESIQ-YGTHTHGQHKNKHRRSAMTW 218
           LG  W+  W  S + Y   TH  +  K RR A+ W
Sbjct: 69  LGPRWTG-WLNSFELYADDTHASNATKQRRRALLW 102


>SB_19269| Best HMM Match : Pkinase (HMM E-Value=2.4e-38)
          Length = 501

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 219 HVIALLLCLFLCWPCVCVPYCMDSCQNADHYCPNCNSYLG 338
           HV A+L+ L  CW C C    +D+       C +C    G
Sbjct: 393 HVDAMLVMLMRCWSCRCDGCHVDAMLVMSMRCWSCRCDAG 432


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,545,160
Number of Sequences: 59808
Number of extensions: 418091
Number of successful extensions: 1188
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)