Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D07
         (467 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0256 + 21331396-21332268                                         32   0.20 
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440...    29   1.9  
08_02_0258 + 14968858-14970648                                         28   4.3  
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485...    27   5.7  
07_01_0153 - 1092242-1092285,1092710-1092865,1093004-1093754           27   5.7  
02_05_0874 - 32377906-32378131,32378269-32378384,32378516-323789...    27   7.5  
06_03_1025 - 26980631-26981286,26981434-26981557,26982290-269824...    27   10.0 

>02_04_0256 + 21331396-21332268
          Length = 290

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 21/54 (38%), Positives = 27/54 (50%)
 Frame = -3

Query: 195 HSTGGTIRVDSESTRLPAHPRVSPLLRLILILFDVVTRLFNKHVTAVDADQENR 34
           HS    I + S + RL AHP   P +RLIL+  D +  LF     A  AD + R
Sbjct: 129 HSPSDLISLLSRAQRLLAHPGRLPPVRLILV--DSIASLFRADFDASPADLKRR 180


>08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,
            44090-44322,45308-45412,45531-45705,46443-46658
          Length = 977

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +1

Query: 43   LVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTINSDGTSGAMVKV 204
            L G+ SR V    P + ++ Y D+ EQW   R R  +  L I+ + + G+  +V
Sbjct: 886  LTGLGSRIV---SPVFGLQSYSDKGEQWFQLR-RPDSKQLQIDGESSKGSRAEV 935


>08_02_0258 + 14968858-14970648
          Length = 596

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 433 ALALKSWLLLWEEIYFTPA 377
           ALA  +WLLL+ ++YF P+
Sbjct: 309 ALAKVNWLLLYSDLYFVPS 327


>07_01_0646 +
           4853546-4853623,4853732-4855357,4855467-4855751,
           4856131-4856277
          Length = 711

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +1

Query: 151 AGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 324
           AG  + +     G  V   + G +NH +S +G          GA TAG AY+ +N  G
Sbjct: 178 AGHSSTSISAALGMAVARDLLGKKNHVISVIGD---------GAMTAGQAYEAMNNSG 226


>07_01_0153 - 1092242-1092285,1092710-1092865,1093004-1093754
          Length = 316

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -1

Query: 380 GSRHFVHRNQGI*VFVRFAPCPFTLS*ANPAVAAPNFIWLVRSTEPRALSLWFS 219
           G  H V  N+ I    RF P       + PA+  PN+ W +     R LS  F+
Sbjct: 61  GFLHNVDGNKAISSVPRFVPTTAASPFSPPAIDPPNWWWALDCRHGRVLSHLFN 114


>02_05_0874 -
           32377906-32378131,32378269-32378384,32378516-32378921,
           32379023-32379139,32379229-32379291,32380183-32380373
          Length = 372

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 290 AVAAPNFIWLVRSTEPRALSLWFSLPVMGTLTIAPEVPSEL 168
           AV AP  +W  R   PR L+L   L +MG   + P +   L
Sbjct: 53  AVMAPFALWFERRVRPR-LTLIIFLKIMGLAILEPVLDQNL 92


>06_03_1025 -
           26980631-26981286,26981434-26981557,26982290-26982426,
           26983220-26983355,26983615-26983922,26985159-26985207
          Length = 469

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +1

Query: 154 GALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 324
           G     SD  + A V  P    E+ ++   G+V++    +L AAT     D + G G
Sbjct: 23  GLRKCKSDSKATASVLAPPKDVEDLQIEGYGNVNIFTYNELRAATKNFRPDQILGEG 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,599,528
Number of Sequences: 37544
Number of extensions: 251756
Number of successful extensions: 576
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)