Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D07
         (467 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)                    30   0.83 
SB_46906| Best HMM Match : DUF1351 (HMM E-Value=2.1)                   29   2.5  
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)              28   3.4  
SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)                   28   4.4  
SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)          28   4.4  
SB_36522| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)                 27   7.7  

>SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)
          Length = 811

 Score = 30.3 bits (65), Expect = 0.83
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
 Frame = -3

Query: 183 GTIRVDSESTRL---PAHPRVSPLLRLILILFD---VVTRLFNKHVTAV 55
           G + V+ +  RL     HPR SPLL+L+    D   VV  LF +HV AV
Sbjct: 614 GKVAVEEKRPRLLRSEFHPRRSPLLQLLSNTPDVHVVVVELFQRHVHAV 662


>SB_46906| Best HMM Match : DUF1351 (HMM E-Value=2.1)
          Length = 192

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -2

Query: 454 GMFLVANALALKSWLLLWEEIYFTPAAVILFTETKEYE 341
           G+F+ A  L++   L  + ++Y  PAA+++   + +YE
Sbjct: 22  GLFITARGLSIHRVLTSFIKMYCDPAALVIVVNSSKYE 59


>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
          Length = 1325

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 210  YGYLDHSTGGTIRVDSESTRLPAHPRVSPL 121
            Y YL H T  T + DS STR+    RV  L
Sbjct: 935  YAYLHHDTRTTCKYDSYSTRIYTATRVRQL 964


>SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)
          Length = 1655

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +1

Query: 1    HSKMFAKLFLVSVLLVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTINSDG 180
            HS +   L L   L+ GV    + +++  Y  E ++   E W + R+ + AGAL++ S  
Sbjct: 1039 HSYLLTNLALADFLM-GVYMLLIAIKDVEYQGEYFKHDIE-WRSGRLCQFAGALSLTSSE 1096

Query: 181  TS 186
             S
Sbjct: 1097 VS 1098


>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
          Length = 685

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 266 WLVRSTEPRALSLWFSLPVMGTLTIAPEVPSELIV 162
           W+V ++EP  LS    + ++ T +I P  P   I+
Sbjct: 472 WVVETSEPLQLSTTIMISIITTTSILPSFPPTAII 506


>SB_36522| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/31 (32%), Positives = 23/31 (74%)
 Frame = -2

Query: 454 GMFLVANALALKSWLLLWEEIYFTPAAVILF 362
           G++L++  L   +W+++W+ ++ + A+VILF
Sbjct: 103 GLYLLSCFLNA-TWIVIWQRMHLSAASVILF 132


>SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1016

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 252 D*TKSTELVVFIASYGYLDHSTGGTIRVDSES 157
           D +K+ E +  IA++  L+H+  G I  DSES
Sbjct: 800 DLSKALEDIKNIAAFNVLEHAKSGEIESDSES 831


>SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)
          Length = 1336

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 22/87 (25%), Positives = 37/87 (42%)
 Frame = +1

Query: 58   SRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLS 237
            +R   + EP   ++  EDQ E  A+S +R +AG     +D   G + +   T N NH   
Sbjct: 1183 ARKAQINEPPSPLKVQEDQRETEAHSPIRTRAGREATCNDHLKGCVNQA--TCN-NHLKG 1239

Query: 238  ALGSVDLTNQMKLGAATAGLAYDNVNG 318
             +      + +K G        D++ G
Sbjct: 1240 CVNQATCNDHLK-GCVNQATCNDHLKG 1265


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,423,532
Number of Sequences: 59808
Number of extensions: 285084
Number of successful extensions: 563
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)