Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D06
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    28   0.89 
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    27   1.6  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    26   2.7  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    25   4.7  
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    25   6.3  
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2...    25   8.3  

>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 27.9 bits (59), Expect = 0.89
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 116 TKHRYQVKGKHQLLALVEHHDKQLR 190
           T  +YQ + K++L AL+E + KQLR
Sbjct: 842 TSQKYQSELKNELYALLEQYKKQLR 866


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 6   EPSRMDPNSEWLPNSI 53
           EP  +DPNS W PN +
Sbjct: 315 EPEGLDPNSWWYPNGL 330


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +3

Query: 294 WS--QSDFGQASPVPVFIKVILI-KYNLYFILIKCSIHYFVIWKL 419
           WS  Q DF    PV   +K  +    N+YF  +K ++H F  +K+
Sbjct: 822 WSTLQRDFTDVDPVRSLMKKTMHGSTNIYFGAVKATLHVFGYFKV 866


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 401 LCNLETALNSCFSL*HCFSLP 463
           LC L+ A+  CFS   CF+LP
Sbjct: 162 LCELQDAIRICFS---CFTLP 179


>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 276 ILCPKLWSQSDFGQASPVPVFIKVIL 353
           IL P LW++  FGQ +P+  +  +++
Sbjct: 223 ILTPNLWAERPFGQ-TPIEEYADILM 247


>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 228

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -1

Query: 108 LHLIRKNEGYKIIIVVQRVLN 46
           L LI+  + +K+I+ VQR+++
Sbjct: 200 LDLIKSTDAFKVILCVQRIIS 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,137,219
Number of Sequences: 5004
Number of extensions: 44170
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)