Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D06
         (495 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22970.1 68417.m03315 peptidase C50 family protein contains P...    30   0.98 
At3g07050.1 68416.m00837 GTP-binding family protein contains Pfa...    29   2.3  
At3g10430.1 68416.m01251 F-box family protein contains F-box dom...    28   3.0  
At2g40460.1 68415.m04993 proton-dependent oligopeptide transport...    28   3.0  
At1g25540.1 68414.m03171 phytochrome and flowering time regulato...    28   3.0  

>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
            PF03568: Peptidase family C50
          Length = 1773

 Score = 29.9 bits (64), Expect = 0.98
 Identities = 23/76 (30%), Positives = 35/76 (46%)
 Frame = +2

Query: 38   VTEFNTLWTTIIIL*PSFFLIKCSSQTKHRYQVKGKHQLLALVEHHDKQLRNARRIAFQH 217
            V++F   +   +I   +  L  CSS    +  +  K Q L L E   K+L+NA+ I   +
Sbjct: 911  VSQFGVKFAGFLIPFVNKLLDLCSSSLISQGNLYHKKQCLDLAE---KELQNAKEILIAN 967

Query: 218  QNTTPCVVAIIKLTKT 265
            Q    CV   +KL  T
Sbjct: 968  QRDFSCVKCKLKLEVT 983


>At3g07050.1 68416.m00837 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 582

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = +2

Query: 95  LIKCSSQTKH-RYQVKGKHQLLALV-EHHDKQLRNARRIAFQHQ 220
           ++K S ++K  R  +K KH++L  V EHH K+ ++A+++    +
Sbjct: 1   MVKRSKKSKSKRVTLKQKHKVLKKVKEHHKKKAKDAKKLGLHRK 44


>At3g10430.1 68416.m01251 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 233 TGLYSGVEMQFSAHFSIVCRDVPPVLGVDVCP*PG 129
           T   S   + FS +FS+   D+P    +D+ P PG
Sbjct: 266 TNKLSDEVVSFSRYFSVTLPDIPLFRSIDILPLPG 300


>At2g40460.1 68415.m04993 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 583

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 122 HRYQVKGKHQLLALVEHHDKQLRNARRIAFQHQNTTPCVVAIIKLTK 262
           H Y+  GKHQ+     HH    R   + A +  +  PC V  +++ K
Sbjct: 277 HYYKSNGKHQV-----HHTPVFRFLDKAAIKTSSRVPCTVTKVEVAK 318


>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
           protein (PFT1) PMID: 12815435
          Length = 836

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 113 QTKHRYQVKGKHQLLALVEHHDKQLRNARRIAFQHQNT 226
           Q +H+ Q + +HQL  L +HH +Q +  ++   QHQ T
Sbjct: 721 QQQHQQQQQQQHQLSQL-QHHQQQQQQQQQQQQQHQLT 757


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,096,095
Number of Sequences: 28952
Number of extensions: 229936
Number of successful extensions: 404
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)