Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D04
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    29   0.40 
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    28   0.69 
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||...    26   3.7  

>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 190 WNNYYHYYNKIASIILAHFIKLQV 261
           W+ Y HY  K+ ++I AH  +LQV
Sbjct: 148 WHRYLHYNKKLYNMIHAHHHRLQV 171


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +1

Query: 79  SLYFIQSSLWLTLQNKSWHKYLLMLD*NMLSIIILIKWNNYYHYYN-KIASIILAHFIKL 255
           +L+FI   L L    K     L+ L   +L I   +KW  Y  YYN  IA   L+  + +
Sbjct: 470 TLHFISEELRLDSVVKPRKDQLVAL---LLQITTWLKWPRYCEYYNFDIAETFLSIPLSI 526

Query: 256 QVTI 267
           QV +
Sbjct: 527 QVDV 530


>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 270 KYCNL*FYKMCQNNRGYF 217
           KYCN  F   C+N+ GY+
Sbjct: 92  KYCNHPFNPKCKNHAGYY 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,524
Number of Sequences: 5004
Number of extensions: 38712
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)