Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D04
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00046-3|AAC47045.2|  244|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AF003151-2|AAK18919.3|  277|Caenorhabditis elegans Prion-like-(q...    27   5.8  

>U00046-3|AAC47045.2|  244|Caenorhabditis elegans Hypothetical
           protein R13F6.5 protein.
          Length = 244

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 133 HKYLLMLD*NMLSIIILIKWNNYYHYYNKIASIILAHFI 249
           HKY L+     L + I   W+ YY ++  I S+  A  +
Sbjct: 124 HKYFLLFLVWPLQLAIFTIWHGYYDFWKTIRSVYTAEIL 162


>AF003151-2|AAK18919.3|  277|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 24
           protein.
          Length = 277

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = -2

Query: 401 SWCNYNLDSKMYILWVMINSTFYETYCCNAIGSCVYNYYDDT*VSIVTCSFIKC 240
           S+C YN+ +   ++   + +      C  A  +C++  +    VS+  CS+ +C
Sbjct: 43  SYC-YNMSTSAMVMVNFVKAGCSRWRCMLAKDTCIFTTFQMVPVSLCCCSYDRC 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,955,544
Number of Sequences: 27780
Number of extensions: 215669
Number of successful extensions: 449
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)