Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D04
         (504 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23080.2 68414.m02886 auxin efflux carrier protein, putative ...    27   9.5  
At1g23080.1 68414.m02885 auxin efflux carrier protein, putative ...    27   9.5  

>At1g23080.2 68414.m02886 auxin efflux carrier protein, putative
           similar to efflux carrier of polar auxin transport
           [Brassica juncea] gi|12331173|emb|CAC24691
          Length = 527

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 480 IISRHFVKSVNPYVMKIYFMS 418
           ++S HF+ S NPY M + F++
Sbjct: 53  LLSFHFISSNNPYAMNLRFIA 73


>At1g23080.1 68414.m02885 auxin efflux carrier protein, putative
           similar to efflux carrier of polar auxin transport
           [Brassica juncea] gi|12331173|emb|CAC24691
          Length = 619

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 480 IISRHFVKSVNPYVMKIYFMS 418
           ++S HF+ S NPY M + F++
Sbjct: 53  LLSFHFISSNNPYAMNLRFIA 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,669,586
Number of Sequences: 28952
Number of extensions: 175122
Number of successful extensions: 323
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)