Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D03
         (523 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0256 + 21331396-21332268                                         32   0.24 
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440...    29   2.3  
08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572...    28   4.0  
06_03_0649 + 23138442-23138842,23139576-23139849,23139929-231405...    28   5.2  
02_05_0792 - 31777775-31778220,31778506-31778630,31778724-317789...    28   5.2  
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485...    27   6.9  
06_01_0825 + 6233525-6233740,6234274-6234461,6234544-6234668,623...    27   6.9  
02_05_0874 - 32377906-32378131,32378269-32378384,32378516-323789...    27   9.1  

>02_04_0256 + 21331396-21332268
          Length = 290

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 21/54 (38%), Positives = 27/54 (50%)
 Frame = -3

Query: 206 HSTGGTIRVDSESTRLPAHPRVSPLLRLILILFDVVTRLFNKHVTAVDADQENR 45
           HS    I + S + RL AHP   P +RLIL+  D +  LF     A  AD + R
Sbjct: 129 HSPSDLISLLSRAQRLLAHPGRLPPVRLILV--DSIASLFRADFDASPADLKRR 180


>08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,
            44090-44322,45308-45412,45531-45705,46443-46658
          Length = 977

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +3

Query: 54   LVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTINSDGTSGAMVKV 215
            L G+ SR V    P + ++ Y D+ EQW   R R  +  L I+ + + G+  +V
Sbjct: 886  LTGLGSRIV---SPVFGLQSYSDKGEQWFQLR-RPDSKQLQIDGESSKGSRAEV 935


>08_01_0663 +
           5721902-5723176,5724162-5724233,5724405-5724560,
           5724655-5724844,5725173-5725255
          Length = 591

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 518 EHVVHSGTDSVEVRNLRNIWHVFSGECFGTEIVVVVME 405
           E + HSG  + +V  L N W+++    F  + VV+V E
Sbjct: 418 ELLAHSGEVNKQVPRLSNFWNMYFTHHFQVDTVVMVRE 455


>06_03_0649 +
           23138442-23138842,23139576-23139849,23139929-23140562,
           23140771-23140826,23141178-23141282,23141295-23141535,
           23142686-23142690
          Length = 571

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 273 NQMKLGAATAGLAYDNVNGHGATLTKTHIPGFGDEMTAAGQVNLFHN 413
           NQ+K+  +    A    N + +T+T+ H  G+ D+M       L+ N
Sbjct: 268 NQLKVHWSRLKSAISEFNDYWSTVTQMHTSGYSDDMLEKEAQRLYAN 314


>02_05_0792 -
           31777775-31778220,31778506-31778630,31778724-31778911,
           31779716-31779892
          Length = 311

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 369 GDEMTAAGQVNLFHNNNHDFSAKAFATKNMPNIPQV-PNFNTVGA 500
           GDE+T A  + L H N  D+ A  F     P   +  PNF  + +
Sbjct: 60  GDEVTLAKAITLLHMNKDDYIAVLFYASWCPFSQECKPNFEILAS 104


>07_01_0646 +
           4853546-4853623,4853732-4855357,4855467-4855751,
           4856131-4856277
          Length = 711

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +3

Query: 162 AGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 335
           AG  + +     G  V   + G +NH +S +G          GA TAG AY+ +N  G
Sbjct: 178 AGHSSTSISAALGMAVARDLLGKKNHVISVIGD---------GAMTAGQAYEAMNNSG 226


>06_01_0825 +
           6233525-6233740,6234274-6234461,6234544-6234668,
           6234858-6234917,6235043-6235074
          Length = 206

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 369 GDEMTAAGQVNLFHNNNHDFSAKAF 443
           GD+   A  VNL H N  DF+A  F
Sbjct: 73  GDDAILARAVNLLHANKEDFAAVLF 97


>02_05_0874 -
           32377906-32378131,32378269-32378384,32378516-32378921,
           32379023-32379139,32379229-32379291,32380183-32380373
          Length = 372

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 301 AVAAPNFIWLVRSTEPRALSLWFSLPVMGTLTIAPEVPSEL 179
           AV AP  +W  R   PR L+L   L +MG   + P +   L
Sbjct: 53  AVMAPFALWFERRVRPR-LTLIIFLKIMGLAILEPVLDQNL 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,176,023
Number of Sequences: 37544
Number of extensions: 289359
Number of successful extensions: 676
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)