Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_D03
(523 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3) 30 1.0
SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0) 29 2.3
SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0) 28 4.1
SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31) 28 5.4
SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37) 28 5.4
SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039) 28 5.4
SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21) 27 7.1
>SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)
Length = 811
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = -3
Query: 194 GTIRVDSESTRL---PAHPRVSPLLRLILILFD---VVTRLFNKHVTAV 66
G + V+ + RL HPR SPLL+L+ D VV LF +HV AV
Sbjct: 614 GKVAVEEKRPRLLRSEFHPRRSPLLQLLSNTPDVHVVVVELFQRHVHAV 662
>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 751
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +3
Query: 333 GATLTKTHIPGFGDEMTAAGQVNLFHNNNHDFSAKAFATKNMPNIPQ-VPNFNTVGAG 503
G+T T IPG G + G+ ++ N H S A P VP T GAG
Sbjct: 322 GSTTKTTKIPGPGKIHISTGKPSITDNTKHKTSPSADGKGGKGEEPTIVPEMTTQGAG 379
>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1778
Score = 28.7 bits (61), Expect = 3.1
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Frame = +3
Query: 117 EDQPEQWANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAA 296
+++P V+ + TIN + +K + GN + L A S N K G
Sbjct: 651 DNEPVTETIDSVKEEDSKATINCIRNNNTYIKQSVEGNNSFSLDASSS---ENVRKEGDK 707
Query: 297 TAGLAY-DNVNGHGATLT-KTHIPGFGDEMTAAGQVN 401
++Y DN+N A T + IPG + + +VN
Sbjct: 708 DVVISYSDNMNNSKAANTDQFGIPGSDSKTGSDSKVN 744
>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
Length = 1325
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -3
Query: 221 YGYLDHSTGGTIRVDSESTRLPAHPRVSPL 132
Y YL H T T + DS STR+ RV L
Sbjct: 935 YAYLHHDTRTTCKYDSYSTRIYTATRVRQL 964
>SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = +3
Query: 312 YDNVNGHGATLTKTHIPGFGDEMTAAGQVNLFHNNNHDFSAKAFATKNMPNIPQVPNFNT 491
Y NGH L ++ P T V F NN+DFS++ A N PN+ F
Sbjct: 273 YTPTNGH-FQLDESVFPNSDSPDTRDQTVESFEINNNDFSSQENAQSN-PNLDNNDRFRP 330
Query: 492 V 494
V
Sbjct: 331 V 331
>SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31)
Length = 624
Score = 27.9 bits (59), Expect = 5.4
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Frame = +3
Query: 87 EEPGYYIEQYE--DQPEQWANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGS 260
E Y E+YE D AN QA + N+ ++G ++ + ++G + K+ A S
Sbjct: 113 ERSEYGGERYETSDFQRSVANRYKELQADSWKKNNVTSAGGLLSLDLSGEGHFKVHANAS 172
Query: 261 VDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGF 368
+ + Y + A L HIPGF
Sbjct: 173 TAIPAAETTDWPQENI-YSTIQYQEAPLPPAHIPGF 207
>SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)
Length = 1655
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +3
Query: 12 HSKMFAKLFLVSVLLVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTINSDG 191
HS + L L L+ GV + +++ Y E ++ E W + R+ + AGAL++ S
Sbjct: 1039 HSYLLTNLALADFLM-GVYMLLIAIKDVEYQGEYFKHDIE-WRSGRLCQFAGALSLTSSE 1096
Query: 192 TS 197
S
Sbjct: 1097 VS 1098
>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
Length = 685
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 277 WLVRSTEPRALSLWFSLPVMGTLTIAPEVPSELIV 173
W+V ++EP LS + ++ T +I P P I+
Sbjct: 472 WVVETSEPLQLSTTIMISIITTTSILPSFPPTAII 506
>SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1016
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 263 D*TKSTELVVFIASYGYLDHSTGGTIRVDSES 168
D +K+ E + IA++ L+H+ G I DSES
Sbjct: 800 DLSKALEDIKNIAAFNVLEHAKSGEIESDSES 831
>SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)
Length = 1336
Score = 27.5 bits (58), Expect = 7.1
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 5/123 (4%)
Frame = +3
Query: 69 SRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLS 248
+R + EP ++ EDQ E A+S +R +AG +D G + + T N NH
Sbjct: 1183 ARKAQINEPPSPLKVQEDQRETEAHSPIRTRAGREATCNDHLKGCVNQA--TCN-NHLKG 1239
Query: 249 ALGSVDLTNQMKLGAATAGLAYDNVNGHGATLT-KTHIPGFGDEMTA----AGQVNLFHN 413
+ + +K G D++ G T H+ G ++ T G VN
Sbjct: 1240 CVNQATCNDHLK-GCVNQATCNDHLKGCVNQATCNDHLKGCVNQATCNDHLKGCVNQATC 1298
Query: 414 NNH 422
N+H
Sbjct: 1299 NDH 1301
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,292,783
Number of Sequences: 59808
Number of extensions: 326990
Number of successful extensions: 687
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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