Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D02
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    29   0.35 
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    28   1.1  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   2.5  
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy...    26   4.3  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    25   10.0 

>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 378 NTVSHRLHSLYLIKNNCQVNTMHRFTNILCMLD 476
           N    +LHS  L+ NNC+VN+   F+++   +D
Sbjct: 211 NQDDEKLHSQSLVGNNCEVNSEDEFSDLESEVD 243


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 370 HRWSWGLGLFIFDDIGYLFTFHFYIE*ENAFIYF-VGTLY 254
           H + W   LF++  IGY++    Y E      Y  VGT++
Sbjct: 26  HLYVWPFALFVYPYIGYVYQNKLYSEEVRYLTYIAVGTIH 65


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +1

Query: 4   RPVLRQPHPADSRELHQVIGPPCGGPTH-AAFSGTRQLFENLLAPSGIGSTSNVP-SPLP 177
           R + R+P P  S  L      P   PTH    S  + +  +   PS  G+++N    PL 
Sbjct: 55  RRLPRKPLPFRSTSLQPPSSQPPAPPTHQREASPVKNIEHSESFPSVFGTSNNHQIVPLT 114

Query: 178 LKFGQFFG 201
           LK G  FG
Sbjct: 115 LKDGNDFG 122


>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 442

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 286 NAFIYFVGTLYLY*VRNEISRKTKITDIAQRIAQT 182
           N  +Y  G  Y+Y   N    KT++   A + A+T
Sbjct: 248 NIGLYMAGAAYMYNYTNSTVWKTRVEGFANKTAKT 282


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 406 RLCSLCETVLRKHRWSWGLGLFIFD 332
           RLCS+   + R  R+ W  G  + +
Sbjct: 120 RLCSIYSIIFRPPRYGWNYGSIVIN 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,708
Number of Sequences: 5004
Number of extensions: 56277
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)