Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D02
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0468 - 23172561-23174201                                         31   0.62 
07_03_0814 + 21700274-21701923,21702282-21702434,21702563-217026...    30   1.1  
10_02_0041 + 4486623-4486855,4487002-4487036,4487132-4487253,448...    30   1.4  
09_04_0108 + 14657020-14657193,14659040-14659355,14659728-146598...    28   4.4  
04_03_0372 + 15068405-15070000                                         28   5.8  
02_05_0315 - 27822379-27823899                                         28   5.8  
08_02_0747 - 20728073-20728081,20728167-20728353,20728810-207289...    27   7.7  

>02_04_0468 - 23172561-23174201
          Length = 546

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 90  SVGRPPTRWSDDLVKFAGIRWMR 22
           ++GR P  W DD   F   RWMR
Sbjct: 411 AIGRDPASWGDDAAAFRPERWMR 433


>07_03_0814 +
           21700274-21701923,21702282-21702434,21702563-21702634,
           21702923-21703033
          Length = 661

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +1

Query: 49  HQVIGPPCGGPTHAAFSGTRQLFENLLAPSGIGSTSNVPSPLP 177
           H++  PP G  T ++ S TR  F+ LL  S + +TS+ PSP P
Sbjct: 16  HRLRLPPAGCSTSSSPSATRYDFDPLL--SYLSTTSSSPSPPP 56


>10_02_0041 +
           4486623-4486855,4487002-4487036,4487132-4487253,
           4487496-4487585,4487711-4487830,4487941-4488024,
           4488123-4488200,4488349-4488474,4488564-4488653,
           4489183-4489218,4489294-4489349,4489569-4489716,
           4489797-4490130,4491249-4491384,4491595-4491636,
           4491725-4491893,4492471-4492554,4492660-4492755
          Length = 692

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 403 LCSLCETVLRKHRWSWGL--GLFIFDDIGYLFT 311
           L  +C T+ R+H   WGL    ++FD IG L T
Sbjct: 648 LTIICVTIQRRHLMVWGLFAPKYVFDAIGLLLT 680


>09_04_0108 +
           14657020-14657193,14659040-14659355,14659728-14659887,
           14661265-14661725,14663778-14663856,14664732-14664882,
           14665414-14665467,14665724-14665888
          Length = 519

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 76  GPTHAAFSGTRQLFENLLAPSGIGSTSNV-PSPLPLKFGQ 192
           G  HAA    R   + L+ PSGI + +     PLP+ FG+
Sbjct: 171 GGGHAATIAVRAAGKGLIRPSGIAAVAPTWAGPLPIVFGR 210


>04_03_0372 + 15068405-15070000
          Length = 531

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 10  VLRQPHPADSRELHQVIGPPCGG 78
           VLR PHP +S +L   + PP GG
Sbjct: 158 VLRPPHPRESVQLLPPLPPPPGG 180


>02_05_0315 - 27822379-27823899
          Length = 506

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 156 ARRTDTRWGQEVLE*LPRTRKRSVGRPPTRW 64
           ARRT  R G+  +    R R R+  RPP RW
Sbjct: 424 ARRTVARDGETTVTTYQRWRHRNDMRPPCRW 454


>08_02_0747 -
           20728073-20728081,20728167-20728353,20728810-20728913,
           20729008-20729139,20729583-20729810,20730263-20730358,
           20730440-20730511,20730588-20730760,20730947-20731000,
           20731086-20731134,20731228-20731326,20731420-20731511,
           20731607-20731832,20731927-20732100,20732186-20732809,
           20732890-20733033,20733108-20733218,20733516-20733650,
           20733963-20733989
          Length = 911

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 28  PADSRELHQVIGPPCGGPT-HAAFSGTRQLFENLLAPSGIGSTSNVPSPL 174
           P + + +H V+G P GG T H+ F   +Q    +   + I S   +   L
Sbjct: 218 PLNKQSVHVVLGLPVGGSTIHSKFDSGKQKILQIFGKTSIPSVKFIGEKL 267


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,940,288
Number of Sequences: 37544
Number of extensions: 388988
Number of successful extensions: 942
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)