Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D02
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    59   2e-09
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    54   7e-08
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    54   7e-08
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    54   7e-08
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    54   7e-08
U88178-6|ABA03112.1|  312|Caenorhabditis elegans Hypothetical pr...    32   0.32 
AL110484-18|CAB54409.1|  357|Caenorhabditis elegans Hypothetical...    31   0.74 
Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical pr...    30   0.98 
Z92796-2|CAB07231.1|  347|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    29   3.0  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    29   3.0  
AF078781-1|AAC26915.2|  258|Caenorhabditis elegans Hypothetical ...    28   5.2  
Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z81533-4|CAB04338.1|  280|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U80843-12|AAB37961.2|  317|Caenorhabditis elegans Hypothetical p...    27   6.9  
Z93393-15|CAE54926.1|  347|Caenorhabditis elegans Hypothetical p...    27   9.1  

>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 25/42 (59%), Positives = 29/42 (69%)
 Frame = -1

Query: 171 WAGHIARRTDTRWGQEVLE*LPRTRKRSVGRPPTRWSDDLVK 46
           WAGH+ARRTD RW   + +  PR  KR VGRPP RW+D L K
Sbjct: 125 WAGHVARRTDGRWTTLMNDWCPRDEKRPVGRPPMRWNDSLRK 166


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 54.0 bits (124), Expect = 7e-08
 Identities = 24/42 (57%), Positives = 27/42 (64%)
 Frame = -1

Query: 171 WAGHIARRTDTRWGQEVLE*LPRTRKRSVGRPPTRWSDDLVK 46
           WAGH+ARR D RW   + E  P   KR VGRPP RW+D L K
Sbjct: 814 WAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRK 855


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 54.0 bits (124), Expect = 7e-08
 Identities = 24/42 (57%), Positives = 27/42 (64%)
 Frame = -1

Query: 171  WAGHIARRTDTRWGQEVLE*LPRTRKRSVGRPPTRWSDDLVK 46
            WAGH+ARR D RW   + E  P   KR VGRPP RW+D L K
Sbjct: 989  WAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRK 1030


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 54.0 bits (124), Expect = 7e-08
 Identities = 24/42 (57%), Positives = 27/42 (64%)
 Frame = -1

Query: 171 WAGHIARRTDTRWGQEVLE*LPRTRKRSVGRPPTRWSDDLVK 46
           WAGH+ARR D RW   + E  P   KR VGRPP RW+D L K
Sbjct: 728 WAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRK 769


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 54.0 bits (124), Expect = 7e-08
 Identities = 24/42 (57%), Positives = 27/42 (64%)
 Frame = -1

Query: 171 WAGHIARRTDTRWGQEVLE*LPRTRKRSVGRPPTRWSDDLVK 46
           WAGH+ARR D RW   + E  P   KR VGRPP RW+D L K
Sbjct: 340 WAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRK 381


>U88178-6|ABA03112.1|  312|Caenorhabditis elegans Hypothetical
           protein W09C3.8 protein.
          Length = 312

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -1

Query: 174 QWAGHIARRTDTRWGQEVLE*LP---RTRKRSVGRPPTRWSDDL 52
           ++AGHI RR   RW +   E  P   +  KR+VG    RW+ D+
Sbjct: 215 RFAGHILRRDPNRWTKICTEWDPSHNKNWKRAVGGQKKRWAKDI 258


>AL110484-18|CAB54409.1|  357|Caenorhabditis elegans Hypothetical
           protein Y38E10A.18 protein.
          Length = 357

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 375 RNTVSHRLHSLYLIKNNCQVNTMHRFTNILCMLDRMDRI 491
           R TVS  +  L    NNCQ++   RF    C  D+ +R+
Sbjct: 38  RRTVSFHIRFLCRYSNNCQISQDLRFICRSCRFDKCERV 76


>Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical
          protein C07A9.10 protein.
          Length = 254

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 99 RKRSVGRPPTRWSDDLVK 46
          +KR VG+PP RW+D L K
Sbjct: 13 KKRPVGKPPMRWTDSLRK 30


>Z92796-2|CAB07231.1|  347|Caenorhabditis elegans Hypothetical
           protein H25K10.3 protein.
          Length = 347

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 367 RWSWGLGLFIFDDIGYLFTFHFY 299
           +W WG G++IF D GY   F+ Y
Sbjct: 90  KWGWGTGIYIFLD-GYCAHFYLY 111


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 74   GGLPTLRFLVRGSYSRTSWPHRVSVLRAMCPAHCHLSLGNSLGNVG 211
            GG+P +R L RGSY+      R++V+  + P     + G  +G  G
Sbjct: 2246 GGIPQMRSLQRGSYTGGGGQQRINVM--VQPQQMRSNNGGGVGGQG 2289


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 74   GGLPTLRFLVRGSYSRTSWPHRVSVLRAMCPAHCHLSLGNSLGNVG 211
            GG+P +R L RGSY+      R++V+  + P     + G  +G  G
Sbjct: 2246 GGIPQMRSLQRGSYTGGGGQQRINVM--VQPQQMRSNNGGGVGGQG 2289


>AF078781-1|AAC26915.2|  258|Caenorhabditis elegans Hypothetical
           protein B0545.3 protein.
          Length = 258

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 122 TSWPHRVSVLRAMCPAHCHLSLGNSLGNV 208
           T  P R SV+  M PA+C L+L   L N+
Sbjct: 24  TPRPSRFSVITKMAPAYCRLNLPARLQNL 52


>Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical
           protein M02G9.3 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 203 CPKNCPNLSGNGLGTLLVEPIPDGAKRFSNSCR 105
           C  +C N   NG    +V  IP  ++   NSC+
Sbjct: 149 CSNSCSNACSNGGNQPIVIVIPSSSRNCQNSCQ 181


>Z81533-4|CAB04338.1|  280|Caenorhabditis elegans Hypothetical
           protein F36G9.7 protein.
          Length = 280

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 151 TSNVPSPLPLKFGQFFGQCRLFWFFC*SH 237
           TS   +P P+ +  +FG   LF +FC  H
Sbjct: 172 TSGFENPYPILYSIYFGFLALFVYFCKIH 200


>U80843-12|AAB37961.2|  317|Caenorhabditis elegans Hypothetical
           protein C32B5.5 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +3

Query: 309 KVNK*PISSKINKPRPQLHRCLRNTVSHRLHSLYLIKNNCQVNTMH 446
           K N  PI+S +N+   + H     T  H L  +     N +V T H
Sbjct: 173 KTNNNPITSIVNRKTKKWHFKAPTTAPHNLRRVLTFLQNRRVTTAH 218


>Z93393-15|CAE54926.1|  347|Caenorhabditis elegans Hypothetical
           protein Y48E1B.16 protein.
          Length = 347

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 1   QRPVLRQPHPADSRELHQVIGPPCGGPTHAAFSGTRQLFENL 126
           Q P  R P PA +R  + V  P    PT  A +  + +FE L
Sbjct: 98  QAPGPRAPAPAPTRPQYGVPAPRAPQPTIPALTTKKSVFERL 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,316,720
Number of Sequences: 27780
Number of extensions: 333538
Number of successful extensions: 800
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)