Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D02
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.39 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.8  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   6.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.4  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   8.4  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   8.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +1

Query: 22   PHPADSRELHQVIGPPCGGPTHAAFSGTRQLFENLLAPSGIGSTSNVPS 168
            PHP +       +GPP G PT+A+ + +R   +++  P   G  S VPS
Sbjct: 1749 PHPGNGHS--GTMGPPVGHPTNAS-AHSRSGSQSM--PRQNGRYSRVPS 1792


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 470 HTQNISKPMHCVYLTIVLYQV 408
           HT + + P HCV      YQ+
Sbjct: 184 HTYSETGPSHCVVCQNFFYQI 204


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 6   TGFAPAASSGFPRTSPGHRTT 68
           TG +P  S     TSP  RTT
Sbjct: 65  TGSSPQHSGSSASTSPAARTT 85


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 12/53 (22%), Positives = 18/53 (33%)
 Frame = +1

Query: 19  QPHPADSRELHQVIGPPCGGPTHAAFSGTRQLFENLLAPSGIGSTSNVPSPLP 177
           Q  P     L   +  P GG    +         N+   SG+    N+P  +P
Sbjct: 388 QVSPVSMSALVSAVRSPAGGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMP 440


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -3

Query: 376 RKHRWSWGLGL 344
           +++ W WGLG+
Sbjct: 96  QQYPWQWGLGI 106


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 496 KIIPFTCKIISQYVVRLTLI 555
           KII  T + I++Y++R+ LI
Sbjct: 64  KIIKSTNEKITRYIIRMFLI 83


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 496 KIIPFTCKIISQYVVRLTLI 555
           KII  T + I++Y++R+ LI
Sbjct: 47  KIIKSTNEKITRYIIRMFLI 66


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 161 CPAHCHLSLGNS 196
           CP HC   LG S
Sbjct: 347 CPLHCKPELGQS 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,052
Number of Sequences: 438
Number of extensions: 4150
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)