Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_D02
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45330.1 68416.m04894 lectin protein kinase family protein co...    31   0.52 
At3g53950.1 68416.m05960 glyoxal oxidase-related contains simila...    29   2.8  
At5g51080.1 68418.m06331 RNase H domain-containing protein low s...    28   3.7  
At4g30440.1 68417.m04323 NAD-dependent epimerase/dehydratase fam...    27   6.4  
At1g08700.1 68414.m00966 presenilin family protein similar to SP...    27   6.4  
At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative s...    27   8.5  
At5g48770.1 68418.m06035 disease resistance protein (TIR-NBS-LRR...    27   8.5  
At5g17250.1 68418.m02021 phosphatidylinositolglycan class O (PIG...    27   8.5  
At2g39990.1 68415.m04914 eukaryotic translation initiation facto...    27   8.5  

>At3g45330.1 68416.m04894 lectin protein kinase family protein
           contains Serine/Threonine protein kinases active-site
           signature, Prosite:PS00108; contains Pfam profiles
           PF00069: Protein kinase domain, PF00139: Legume lectins
           beta domain, PF00138: Legume lectins alpha domain
          Length = 682

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 59  SDHLVGGLPTLRFLVRGSYSRTSWPHRVSVLRAMCPAHCHLSLGNS 196
           S ++ GG    ++L  G     SW  RVS+LR +  A C+L  G S
Sbjct: 421 SKYMEGGSVD-QYLFHGDKPPLSWSQRVSILRDIASALCYLHTGAS 465


>At3g53950.1 68416.m05960 glyoxal oxidase-related contains
           similarity to glyoxal oxidase precursor [Phanerochaete
           chrysosporium] gi|1050302|gb|AAA87594
          Length = 545

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -2

Query: 176 GNGLGTLLVEP-IPDGAKRFSNSCRVPENAAWVGPP 72
           G  L  L V P +PDG  R+   C  P N A V PP
Sbjct: 488 GQRLVKLTVAPSVPDGVGRYRIQCTAPPNGA-VSPP 522


>At5g51080.1 68418.m06331 RNase H domain-containing protein low
           similarity to GAG-POL precursor [Oryza sativa (japonica
           cultivar-group)] GI:5902445; contains Pfam profile
           PF00075: RNase H
          Length = 322

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 303 KWKVNK*PISSKINKPRPQL-HRCLRNTVSHRLHSL 407
           +WKVN   + SK++K   QL  +CL   +SH L SL
Sbjct: 266 QWKVNH-EVLSKLHKEAKQLSDKCLSFEISHVLRSL 300


>At4g30440.1 68417.m04323 NAD-dependent epimerase/dehydratase family
           protein similar to nucleotide sugar epimerase from
           Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
           [Escherichia coli] GI:5739472, CAPI protein
           {Staphylococcus aureus} SP|P39858; contains Pfam profile
           PF01370 NAD dependent epimerase/dehydratase family
          Length = 429

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 324 PISSKINKPRPQLHRCLRNTVSHRLHSLYLI 416
           P   KI++   QLHRC  +T +  L +L+LI
Sbjct: 13  PGKFKIDRSNRQLHRCFASTSTMFLWALFLI 43


>At1g08700.1 68414.m00966 presenilin family protein similar to
           SP|P52166 Presenilin sel-12 {Caenorhabditis elegans};
           contains Pfam profile PF01080: Presenilin
          Length = 453

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -1

Query: 360 AGVLVCLFLMILVTYLLSI 304
           A V +C+FL++L+TY LS+
Sbjct: 18  APVSICMFLVVLLTYSLSV 36


>At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative
           similar to SP|P04051 DNA-directed RNA polymerase III
           largest subunit (EC 2.7.7.6) {Saccharomyces cerevisiae};
           contains InterPro accession IPR000722: RNA polymerase,
           alpha subunit
          Length = 1328

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 161 CPAHC-HLSLGNSLGNVGYFGFSADLISDLIQIQCAHKI 274
           CP H  +L L   + NVGYF F  D++  + + +C++ +
Sbjct: 85  CPGHYGYLKLDLPVYNVGYFNFILDILKCICK-RCSNML 122


>At5g48770.1 68418.m06035 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1190

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 197 KNCPNLSGNGLGTLLVEPIPDGAKRFSNSCRVPENAAWVGP 75
           +N  NL  + LGTL V  + DG  +      + + A+W GP
Sbjct: 277 QNGANLIRSRLGTLKVLFVLDGVDKVEQLHALAKEASWFGP 317


>At5g17250.1 68418.m02021 phosphatidylinositolglycan class O (PIG-O)
           family protein similar to Pig-o [Mus musculus]
           GI:8099973
          Length = 884

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -3

Query: 394 LCETVLRKHRWSWGL--GLFIFDDIGYLFT 311
           LC T+ R+H   WGL    F+FD +  + T
Sbjct: 843 LCVTIQRRHLMVWGLFAPKFVFDVVDLILT 872


>At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3
           subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to
           SP|O04202 Eukaryotic translation initiation factor 3
           subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
           {Arabidopsis thaliana}; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 293

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 188 PNLSGNGLGTLLVEPIPDGAKRFSNSCRVPEN 93
           P+ +   +GTLL   +PDG     NS  VP N
Sbjct: 46  PDSAERVIGTLLGSILPDGTVDIRNSYAVPHN 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,343,639
Number of Sequences: 28952
Number of extensions: 298495
Number of successful extensions: 723
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)