Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_C24
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1152 + 28044667-28045239,28045330-28045750,28045940-28046298 31 0.62
03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187... 30 1.4
04_03_0305 - 14125193-14125421,14125666-14127104 29 1.9
10_02_0157 - 5954439-5954801,5956244-5956270,5956465-5956526,595... 29 2.5
12_02_0674 - 21745321-21746223,21746229-21747608 28 4.4
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 28 4.4
07_01_1046 - 9138000-9138293,9139550-9139714,9139862-9140010,914... 28 5.8
01_06_0146 + 26969011-26969995,26970878-26970930 28 5.8
08_02_0953 + 22987254-22987604 27 7.7
>06_03_1152 + 28044667-28045239,28045330-28045750,28045940-28046298
Length = 450
Score = 31.1 bits (67), Expect = 0.62
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 444 GITGSRYCRMMDNHVWHWCV 503
G+ GSR+ +MM W WC+
Sbjct: 8 GVNGSRWAKMMSTDSWRWCL 27
>03_02_0981 +
12917195-12917572,12917661-12917818,12918732-12918765,
12918942-12919074,12919167-12919221,12919281-12920064,
12920440-12920769,12920788-12920895,12921259-12921678,
12921775-12921847,12922291-12922376,12922873-12922992,
12923086-12923156,12923350-12923449
Length = 949
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Frame = +2
Query: 368 CIQCRP---SLCCCESFAYSACPECIGRWYN 451
C QCR ++CC C CI RWY+
Sbjct: 151 CHQCRRVANTICCTSCDRRGYCTNCISRWYS 181
>04_03_0305 - 14125193-14125421,14125666-14127104
Length = 555
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +3
Query: 276 DALAVGVPSMYTNNLPASTFVCQSIA--ANTEIVSNVAPVYAVVKVLHTLHVLNALVGGI 449
DA GVP +P + V + A EIV+ VA A K + LH+++A+ +
Sbjct: 475 DAAVFGVPDEEAGEVPVACVVRRHGAEEGEEEIVAYVAERVASYKRVRVLHIVDAIPKSV 534
Query: 450 TG 455
+G
Sbjct: 535 SG 536
>10_02_0157 -
5954439-5954801,5956244-5956270,5956465-5956526,
5956971-5957592
Length = 357
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 253 QSPIKQIPTLWLLAFPACIPTTFQPRPSYASPSLPT 360
Q+ + Q P + P +PTT P P+ +P LPT
Sbjct: 17 QAAMAQRPGMPPAVVPPSLPTTTPPAPTVVAPPLPT 52
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 28.3 bits (60), Expect = 4.4
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Frame = +1
Query: 163 YSELITPSCTPCAMRDFVVD---NCFSGGRSSRQSPIKQIPTL-----WLLAFPACIPTT 318
Y + P+C P +D NC GGR +++ ++ P L + +P++
Sbjct: 349 YFSVEPPACVPAETAMVELDDKGNCLGGGRPEQKTSLECAPLLKRPIDCRTNTCSALPSS 408
Query: 319 FQPRPSYASPSLPTQKLYPM-SPQ 387
+P P +P+ PT P+ SP+
Sbjct: 409 SKPAPKKITPTPPTLAPPPLISPK 432
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +1
Query: 235 GGRSSRQSPIK--QIPTLWLLAFPACIPTTFQPRPSYASPSLPTQKLYP 375
GG S I+ Q P FP P QP P +A P+ P Q+ P
Sbjct: 47 GGNGPVPSSIRAPQAPPPGARPFPGSPPPPSQPPPPFARPAAPVQQQPP 95
>07_01_1046 -
9138000-9138293,9139550-9139714,9139862-9140010,
9140363-9140510,9140659-9140727,9140827-9141087,
9141498-9141692,9142932-9143048,9143701-9144477
Length = 724
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 554 CSRECWGAKPPTDTRFLNTPVPYVII 477
CS EC + P TD R + T PYV +
Sbjct: 48 CSTECGKSDPHTDVRKIITSDPYVSV 73
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +1
Query: 292 AFPACIPTTFQPRPSYASPSLPTQKLYPMSPQFML 396
A P P QP P PSLP P SP+ ML
Sbjct: 101 AAPPPAPAPDQPAPPSPPPSLPPSPPAPGSPESML 135
>08_02_0953 + 22987254-22987604
Length = 116
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -2
Query: 548 RECWGAKPPTDTRFLNTPVPYVIIHHT--AIPTA 453
RE G KPP D + P+P V++ H +P A
Sbjct: 31 RELLGEKPPLDPAVMAMPMPMVMMVHVVGVVPAA 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,863,181
Number of Sequences: 37544
Number of extensions: 392832
Number of successful extensions: 1264
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -