Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C24
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)              32   0.37 
SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)              32   0.37 
SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17)                   31   0.48 
SB_59517| Best HMM Match : Cu-oxidase_2 (HMM E-Value=1e-06)            30   1.5  
SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_53046| Best HMM Match : Cu-oxidase_3 (HMM E-Value=2.8e-31)          30   1.5  
SB_25690| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_21521| Best HMM Match : Trypsin (HMM E-Value=1.7e-23)               29   3.4  
SB_53568| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.61)          28   5.9  
SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)                   28   5.9  
SB_60| Best HMM Match : ABC_membrane (HMM E-Value=0.00037)             28   5.9  
SB_5915| Best HMM Match : zf-TAZ (HMM E-Value=0.06)                    27   7.9  
SB_4209| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  
SB_43575| Best HMM Match : Sina (HMM E-Value=0)                        27   7.9  
SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2)                 27   7.9  
SB_28746| Best HMM Match : UPF0193 (HMM E-Value=0.31)                  27   7.9  
SB_16309| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_9048| Best HMM Match : UPF0193 (HMM E-Value=0.38)                   27   7.9  

>SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
          Length = 858

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = -2

Query: 332 GRGWKVVGIHAGNANSQSVGICLIGDWRDDLPPEKQLSTTKSLIAQ 195
           G G     +H  N+N    G     D RDD PPE   STT+   AQ
Sbjct: 152 GGGQNACVLHRQNSNGTESGDDHFEDCRDDSPPETSTSTTRYHNAQ 197


>SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
          Length = 911

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = -2

Query: 332 GRGWKVVGIHAGNANSQSVGICLIGDWRDDLPPEKQLSTTKSLIAQ 195
           G G     +H  N+N    G     D RDD PPE   STT+   AQ
Sbjct: 192 GGGQNACVLHRQNSNGTESGDDHFEDCRDDSPPETSTSTTRYHNAQ 237


>SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17)
          Length = 1013

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 329  DLRMPVHRCQHRNCIQCRPSLCCCESFAYSACPECIG 439
            DLR  V    H + ++C  S C C  F Y  C EC G
Sbjct: 947  DLRRGVCTSGH-SWLRCAVSFCICAEFKYHVCIECRG 982


>SB_59517| Best HMM Match : Cu-oxidase_2 (HMM E-Value=1e-06)
          Length = 203

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 557 FCSRECWGAKPPTDTRFLNTPVPYVIIHHTAIPTACYT 444
           FCSR+ W A  P D  F N P+   ++    +P+  YT
Sbjct: 29  FCSRQRWSAGQPKDLNFDNPPLKDTVV----VPSFGYT 62


>SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 577

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +2

Query: 311 QQPSSLDLRMPVHRCQHRNCIQCRPSLCCC---ESFAYSACPECIGRWY 448
           Q+P SL     +  C+HR+CI+C          ES     CPEC  R++
Sbjct: 85  QRPRSLF--PDISTCEHRSCIECLRQYMTIEINESRVNLTCPECSERFH 131


>SB_53046| Best HMM Match : Cu-oxidase_3 (HMM E-Value=2.8e-31)
          Length = 570

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 557 FCSRECWGAKPPTDTRFLNTPVPYVIIHHTAIPTACYT 444
           FCSR+ W A  P D  F N P+   ++    +P+  YT
Sbjct: 396 FCSRQRWSAGQPKDLNFDNPPLKDTVV----VPSFGYT 429


>SB_25690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 554 CSRECWGAKPPTDTRFLNTPVPYVIIHHTAI 462
           C R C   +PPTDT F+N  V + I +  A+
Sbjct: 140 CGRSC---QPPTDTCFVNADVAFAIDNSAAV 167


>SB_21521| Best HMM Match : Trypsin (HMM E-Value=1.7e-23)
          Length = 299

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +1

Query: 85  FQVERYVNSAAPGHSVAMA*LCPINLYSELITPSCTPCAMRDFVV--DNCFSGGRSS 249
           ++ E+YV      H +A+  L     +S  ++P C P    D +   +NCF+ G+S+
Sbjct: 104 YKHEKYVGGKDKKHDLALIKLAKPATFSTKVSPVCLP-KQGDLMKERENCFATGKSA 159


>SB_53568| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.61)
          Length = 375

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +2

Query: 269 KYRRSGCWRSQHVYQQPSSLDLR-MPVHRCQHRNCIQCRPSLCCCESFAYSACPE 430
           KY+   C    H    P+S+      +   + RN  +C+     CE  A  +CP+
Sbjct: 270 KYKFVACIEKHHPTLPPTSMPSNETEIEGLERRNMTKCKVMFKKCEKAAGDSCPK 324


>SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1075

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +3

Query: 231 FWRKVISPITDQANTDALAVGVPSMYTNNLPASTFVCQSIAANTEIVSNVAPV---YAVV 401
           FW ++I    +Q+   +L +   S   NNL   +F+  S  A T  ++   P    Y V 
Sbjct: 681 FWEQLIRHQDEQSMALSLVISARSWMNNNLDLVSFLFVSAVAATAAITQQDPACIGYDVY 740

Query: 402 KVL 410
           +VL
Sbjct: 741 QVL 743


>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 325 PRPSYASPSLPTQKLYPMSP 384
           PR S  SPS P++ +Y MSP
Sbjct: 59  PRESLISPSTPSEVIYQMSP 78


>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
          Length = 509

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 456 CLLYHRPMHSGHAEYAKLSQQHK 388
           CLLYHRP  S H   ++L   H+
Sbjct: 420 CLLYHRPRLSNHHRPSRLLHCHR 442



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 447 YHRPMHSGHAEYAKLSQQHKLGRH 376
           +HRP    H    +LS  H+L RH
Sbjct: 259 HHRPSRHLHCHCPRLSNHHRLSRH 282


>SB_60| Best HMM Match : ABC_membrane (HMM E-Value=0.00037)
          Length = 274

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +3

Query: 231 FWRKVISPITDQANTDALAVGVPSMYTNNLPASTFVCQSIAANTEIVSNVAPV---YAVV 401
           FW ++I    +Q+   +L +   S   NNL   +F+  S  A T  ++   P    Y V 
Sbjct: 170 FWEQLIRHQDEQSMALSLVISARSWMNNNLDLVSFLFVSAVAATAAITQQDPACIGYDVY 229

Query: 402 KVL 410
           +VL
Sbjct: 230 QVL 232


>SB_5915| Best HMM Match : zf-TAZ (HMM E-Value=0.06)
          Length = 285

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +3

Query: 270 NTDALAVGVPSM--YTNNLPASTFVCQSIAAN 359
           +TD +A   P+M  Y NNLP +T V  ++ AN
Sbjct: 196 DTDVIASHRPAMLDYLNNLPNNTLVVVTVQAN 227


>SB_4209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 340 HTKVEAGRLLVYMLGTPTARASVFA*SVIGEMTFLQKS 227
           H KV  GR +V   G PT R S F  S++  +   QKS
Sbjct: 25  HKKVPIGRPIVSGSGGPTERISSFVDSLLQPIAQKQKS 62


>SB_43575| Best HMM Match : Sina (HMM E-Value=0)
          Length = 432

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = +2

Query: 305 VYQQPSSLDLRMP-VHRCQ--HRNCIQCRPSLCCC 400
           +++ P   D  +P + +C   H  C  CRP L CC
Sbjct: 34  IFECPVCFDYVLPPILQCSSGHLVCSNCRPKLTCC 68


>SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2)
          Length = 2658

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 416  SMQNFHNSINWGDIGYNFCVGSDGLAYEGRGWKVVGIHAGNANSQSV 276
            S Q  H S++ G +G+N  V ++    +G   K  G       SQSV
Sbjct: 1850 SDQGEHTSVSSGTMGFNRTVATEPTVIQGPPSKHTGCQTDQGPSQSV 1896


>SB_28746| Best HMM Match : UPF0193 (HMM E-Value=0.31)
          Length = 927

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 340 HTKVEAGRLLVYMLGTPTARASVFA*SVIGEMTFLQKS 227
           H KV  GR +V   G PT R S F  S++  +   QKS
Sbjct: 536 HKKVPIGRPIVSGSGGPTERISSFVDSLLQPIAQKQKS 573


>SB_16309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 340 HTKVEAGRLLVYMLGTPTARASVFA*SVIGEMTFLQKS 227
           H KV  GR +V   G PT R S F  S++  +   QKS
Sbjct: 67  HKKVPIGRPIVSGSGGPTERISSFVDSLLQPIAQKQKS 104


>SB_9048| Best HMM Match : UPF0193 (HMM E-Value=0.38)
          Length = 663

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 340 HTKVEAGRLLVYMLGTPTARASVFA*SVIGEMTFLQKS 227
           H KV  GR +V   G PT R S F  S++  +   QKS
Sbjct: 404 HKKVPIGRPIVSGSGGPTERISSFVDSLLQPIAQKQKS 441


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,321,605
Number of Sequences: 59808
Number of extensions: 449847
Number of successful extensions: 1350
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)