Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C24
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05700.1 68414.m00591 leucine-rich repeat protein kinase, put...    29   2.8  
At5g59920.1 68418.m07514 DC1 domain-containing protein contains ...    28   3.7  
At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ...    28   4.9  
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ...    28   4.9  
At1g44800.1 68414.m05132 nodulin MtN21 family protein similar to...    28   4.9  
At1g63730.1 68414.m07212 disease resistance protein (TIR-NBS-LRR...    27   6.4  
At3g53090.1 68416.m05851 HECT-domain-containing protein / ubiqui...    27   8.5  
At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1) (...    27   8.5  
At1g71980.1 68414.m08320 protease-associated zinc finger (C3HC4-...    27   8.5  
At1g36970.1 68414.m04608 hypothetical protein                          27   8.5  

>At1g05700.1 68414.m00591 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase, gi|2129635; contains leucine rich repeat (LRR)
           domains, Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 843

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 212 LSLITAFLEEGHLANHRSSKYRRSGCWRSQ 301
           + LI  F+  G++A+H + KY+ +  WR +
Sbjct: 629 MGLIYEFMANGNMADHLAGKYQHTLSWRQR 658


>At5g59920.1 68418.m07514 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 353 SDGLAYEGRGWKVVGIHAGNANSQSV 276
           SDG AY    W  V +H G+ N   V
Sbjct: 455 SDGFAYSSHEWSDVDVHCGSLNEPLV 480


>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
           nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
           cDNA provides a truncated ORF likely due to a skipped
           exon. An alternative ORF is provided.
          Length = 383

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +1

Query: 229 FSGGRSSRQSPIKQIPTLWLLAFPACIPTTFQPRPSYASPSLPTQKLYPMSP 384
           FSG       P+   P L     P+  P++  P  + +SP++P    YP  P
Sbjct: 196 FSGSNGQPPLPVSPPPPL-----PSSHPSSLFPVTTNSSPTIPPSSSYPQMP 242


>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
           nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
           cDNA provides a truncated ORF likely due to a skipped
           exon. An alternative ORF is provided.
          Length = 661

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +1

Query: 229 FSGGRSSRQSPIKQIPTLWLLAFPACIPTTFQPRPSYASPSLPTQKLYPMSP 384
           FSG       P+   P L     P+  P++  P  + +SP++P    YP  P
Sbjct: 196 FSGSNGQPPLPVSPPPPL-----PSSHPSSLFPVTTNSSPTIPPSSSYPQMP 242


>At1g44800.1 68414.m05132 nodulin MtN21 family protein similar to
           MtN21 [Medicago truncatula] GI:2598575; contains Pfam
           profile PF00892: Integral membrane protein
          Length = 370

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
 Frame = +3

Query: 228 LFWRK----VISPITDQ----ANTDALAVGVPSMYTNNLPASTFVCQSIAANTEIVSNVA 383
           +FWR     ++ P+ DQ          +    S +TN LPA TF+  ++    E V N  
Sbjct: 73  IFWRLLALGILEPLMDQNLYYIGLKNTSASYTSAFTNALPAVTFIL-ALIFRLETV-NFR 130

Query: 384 PVYAVVKVLHTL 419
            V++V KV+ T+
Sbjct: 131 KVHSVAKVVGTV 142


>At1g63730.1 68414.m07212 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 966

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +1

Query: 199 AMRDFVVDNCFSGGRSSRQSPIKQIPTLWLLAFPACIPTTFQPRPSYASPSLPT 360
           A+ D    NCF  G+ +R+   KQ    WL      +P  F  R    S ++PT
Sbjct: 824 AIEDLYFSNCFKLGQEARRVITKQSRDAWLPG--RNVPAEFHYRAVGNSLTIPT 875


>At3g53090.1 68416.m05851 HECT-domain-containing protein /
           ubiquitin-transferase family protein / IQ
           calmodulin-binding motif-containing protein contains
           Pfam profiles PF00632: HECT-domain
           (ubiquitin-transferase), PF00612: IQ calmodulin-binding
           motif
          Length = 1142

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 395 SINWGDIGYNFCVGSDGLAYEGRGW 321
           SIN  D GYNFC  + G + + + W
Sbjct: 125 SINSNDQGYNFCSLAVGTSEDSKTW 149


>At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1)
           (PRC9) identical to GB:AAC32057 from [Arabidopsis
           thaliana] (Genetics (1998) 149 (2), 677-692); identical
           to cDNA proteasome subunit prc9 GI:2511583
          Length = 250

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -2

Query: 326 GWKVVGIHAGNANSQSVGICLIGDWRDDLPPEKQLSTTKSLIAQGVQLGVISSE 165
           GWK   + A N  +QS+   L  D++DD   E+ +     ++ + +    ++SE
Sbjct: 158 GWKAAAVGANNQAAQSI---LKQDYKDDATREEAVELALKVLTKTMDSTSLTSE 208


>At1g71980.1 68414.m08320 protease-associated zinc finger
           (C3HC4-type RING finger) family protein identical to
           ReMembR-H2 protein JR702 [Arabidopsis thaliana]
           gi|6942149|gb|AAF32326; contains Pfam domain, PF02225:
           protease-associated (PA) domain and Pfam domain,
           PF00097: Zinc finger, C3HC4 type (RING finger);
           identical to cDNA ReMembR-H2 protein JR702 mRNA, partial
           cds GI:6942148
          Length = 448

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
 Frame = +1

Query: 247 SRQSPIKQIPTLWLLAFPACIP------TTFQPRPSYASPSLPTQKLYPMSP 384
           S++S I  + +   L +P   P      + ++P PS ASP++     YP++P
Sbjct: 375 SQRSYISHMASPQSLGYPTISPFNTRYMSPYRPSPSNASPAMAGSSNYPLNP 426


>At1g36970.1 68414.m04608 hypothetical protein
          Length = 439

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +3

Query: 228 LFWRKVISPITDQANTDALAVGVPSMYTNNLPASTFVCQSIAAN-TEIVSNVAPVY 392
           L WR++ +  T++ + D+     P  Y N  P S F+ + I+AN TE+ ++  P+Y
Sbjct: 283 LSWRELKTHKTNKDSVDS-----PQNYLNETP-SMFIPKFISANSTEVPTSHQPIY 332


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,278,946
Number of Sequences: 28952
Number of extensions: 304939
Number of successful extensions: 915
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)