Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C23
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    28   1.1  
SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.4  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   4.5  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   7.9  

>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 16  NRHGATLTNTHIP-GIGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNTV 186
           N+   T T+T    G GDK S AGK N+   +    S  +    +    S+ PS N+V
Sbjct: 252 NKESTTATSTLTDAGFGDKSSTAGKHNVETTSPPSSSPNSDDAYSPQVDSYSPSINSV 309


>SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 117 IMVVVMKQVHFTSNRQFISNSRNMSVCEGSSVAV 16
           I  V +  + F ++      S N+SV EGSS+ +
Sbjct: 73  IYAVCLMNIFFRNSENCFKYSMNLSVAEGSSILI 106


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 16/70 (22%), Positives = 29/70 (41%)
 Frame = +1

Query: 58  IGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNTVGGGLEYMFKDKIGASAS 237
           I    ++ G   L  NN       AF + +  T +   S++++  GL+ + K        
Sbjct: 197 ISSSSNLGGNPGLIANNPSASKNFAFTSGSSSTNNSTTSSSSMANGLQSISKHSAAFPLL 256

Query: 238 AAHTDFFNKN 267
           +  T FF +N
Sbjct: 257 SNATSFFGEN 266


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 152 PPFPIYHQPTLLVVVSNICSRTRSVHQRAPL 244
           P F      +     + +C +TRS HQ+ PL
Sbjct: 404 PAFAFLRFDSQQAAYAAVCGKTRSPHQKKPL 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,338,979
Number of Sequences: 5004
Number of extensions: 47269
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)