Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C23
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0129 + 18431820-18432224                                         31   0.50 
01_01_0056 + 422141-422379,422524-422620,422697-422774,422871-42...    29   2.7  
04_04_1376 + 33058306-33059763,33059851-33059991,33060594-330606...    27   8.1  

>01_05_0129 + 18431820-18432224
          Length = 134

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 125 RRRSRPEICPPFPIYHQPTLLVVVSNICSRT 217
           RRR RP   PP P  H P   V+V+   +RT
Sbjct: 4   RRRQRPSSSPPLPPEHSPLPSVIVATARART 34


>01_01_0056 +
           422141-422379,422524-422620,422697-422774,422871-422930,
           423019-423123,423743-423856,424145-424186,424380-424496,
           424568-424755,425502-425785,425869-425990,426118-426160,
           426265-426356,427331-427379,427623-427693,427793-427912,
           428586-428674,429266-429311,429926-429973
          Length = 667

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 139 SRTPSRINHGRCYETGSLYQQQTI 68
           SRTPS ++H   +E+G    QQTI
Sbjct: 16  SRTPSALHHNGAFESGEPSMQQTI 39


>04_04_1376 +
           33058306-33059763,33059851-33059991,33060594-33060644,
           33061094-33061171,33061245-33061388,33061871-33062002
          Length = 667

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
 Frame = +1

Query: 46  HIPGIGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTN--TVGGGLEYMFKDK 219
           +I G+  + S     +  H ND      A ++ N    ++LPS N   V   L+     +
Sbjct: 223 NIEGVNGQCSAGASTSFSHRNDSIFHNIASSSHNPSPSTNLPSPNCLLVPSTLDEQL-PR 281

Query: 220 IGASASAAHTDFFNKN--DYNLGGKLNLFKTPSTSLDFTAG----WHKFDTPFMKSSW 375
            GA+ +   +  ++ +  + N GG    F+ P TSL    G    W    T    +SW
Sbjct: 282 YGATTAGLSSSSYDPSGGNNNSGGSQRSFR-PRTSLAQHIGPYGVWPSSSTIRHSNSW 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,087,425
Number of Sequences: 37544
Number of extensions: 308273
Number of successful extensions: 772
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)