Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C23
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20314| Best HMM Match : RVT_1 (HMM E-Value=1e-32)                   29   2.1  
SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)                   28   4.8  
SB_14968| Best HMM Match : IL3 (HMM E-Value=8.6)                       28   6.3  
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 28   6.3  
SB_24208| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7)             27   8.3  

>SB_20314| Best HMM Match : RVT_1 (HMM E-Value=1e-32)
          Length = 1556

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +1

Query: 91  NLFHNNDHDLSAKAFAT-RNMPTISHLPST-NTVGGGLEYMFKDKIGASASAAHTDFFNK 264
           NL     +D+++    T ++M  +   PST N    GL+   +   GAS S    D F++
Sbjct: 513 NLTFKKAYDIASSMETTAQHMADLQSAPSTLNVELNGLKVQMELDTGASLSVIGEDIFDQ 572

Query: 265 NDYNLGGKLNLFKTPSTSLDFT 330
                G  LNL  T  T   +T
Sbjct: 573 LKNIEGSSLNLQDTKLTLKTYT 594


>SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)
          Length = 808

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +1

Query: 55  GIGDKLSVAGKVNLFHNNDHDLSAKAFAT 141
           G+ D L++ G VN+FHN   DL++++ +T
Sbjct: 612 GLSD-LTIDGHVNIFHNQGTDLNSQSGST 639


>SB_14968| Best HMM Match : IL3 (HMM E-Value=8.6)
          Length = 321

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/59 (23%), Positives = 25/59 (42%)
 Frame = +1

Query: 97  FHNNDHDLSAKAFATRNMPTISHLPSTNTVGGGLEYMFKDKIGASASAAHTDFFNKNDY 273
           F N D++ +             H P  N  GGG+  +FKD +    ++   + FN  ++
Sbjct: 224 FKNGDYNSAEMGTLCPTGYRFLHSPRLNARGGGVALLFKDLLRLEINSRICEHFNTFEF 282


>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1706

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = +2

Query: 92  TCFITTTMIYPRRRSRPEICPPFPIYHQPTLLVVVSNICSRTRSVHQRAP 241
           TC   T   Y R   R   C PF  +   T  V  SN C  TR+ +   P
Sbjct: 26  TCRFETC--YERDTGRATPCMPFTSFMSLTRNVTTSNTCGTTRAKYCELP 73


>SB_24208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 463

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 166 NGKWWAYFWSRTPSRINH 113
           N +WW Y + RTP    H
Sbjct: 13  NSEWWMYLYHRTPEGATH 30


>SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7)
          Length = 733

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 178 WLMVNGKWWAYFWSRTPSRINHG 110
           WL+ N  W   FW+  P   +HG
Sbjct: 165 WLLSNTNWMRKFWTSDPKFRSHG 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,433,206
Number of Sequences: 59808
Number of extensions: 356778
Number of successful extensions: 787
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)